Browse Element(s) Details


OsAffx.26990.1.S1_at

Description tigr:9633.m02127
TID=OsAffx.26990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2391011/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23890NANA5+13662507..13664470retrotransposon protein, putative, LINE subclass
LOC_Os05g23900OsAffx.26989.1.S1_at11/115+13667941..13668614hypothetical protein
LOC_Os05g23910OsAffx.26990.1.S1_at11/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23910Os.24936.1.A1_at9/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23924Os.9795.1.S1_at11/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924OsAffx.26991.1.S1_at10/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924Os.12284.1.S1_at1/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23940Os.12931.1.S1_at11/115+13694317..13703825Transcription factor TFIIB repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26990.1.S1_at--712--932Chr10:19894133..19894157 (23 bp)
AGGCACTAGGAAGTACTGCTCCTGA
NONE
OsAffx.26990.1.S1_at--923--3831Chr05:13672489..13672513 (25 bp)
CTGCTCCTGACATAGATACTTCTGC
LOC_Os05g23910
OsAffx.26990.1.S1_at--528--10191Chr05:13672523..13672547 (25 bp)
TATTAAGCTAGACCAAATGACCTCA
LOC_Os05g23910
OsAffx.26990.1.S1_at--691--9531Chr05:13672549..13672573 (25 bp)
TCTACCATCCTACCCAAGAAATGCA
LOC_Os05g23910
OsAffx.26990.1.S1_at--1090--1411Chr05:13672565..13672589 (25 bp)
AGAAATGCAGGCCTCACGTTTAGCT
LOC_Os05g23910
OsAffx.26990.1.S1_at--752--10331Chr05:13672583..13672607 (25 bp)
TTTAGCTGGGTATCCACCCCATGTT
LOC_Os05g23910
OsAffx.26990.1.S1_at--584--4331Chr05:13672601..13672625 (25 bp)
CCATGTTCCTATATATCCTCCTATA
LOC_Os05g23910
OsAffx.26990.1.S1_at--392--791Chr05:13672632..13672656 (25 bp)
ATGGGAACTCAACACAAGCTGTCTC
LOC_Os05g23910
OsAffx.26990.1.S1_at--446--2691Chr05:13672647..13672671 (25 bp)
AAGCTGTCTCCATTCACTTTTATGA
LOC_Os05g23910
OsAffx.26990.1.S1_at--919--1111Chr05:13672797..13672821 (25 bp)
AGTGATGTTGCTATTGTTGTCCAGC
LOC_Os05g23910
OsAffx.26990.1.S1_at--1059--7611Chr05:13672825..13672849 (25 bp)
GGGAAACTACACACCCATTCTCATC
LOC_Os05g23910
Target Sequence 
AGGCACTAGGAAGTACTGCTCCTGACATAGATACTTCTGCTAGGAAGCATATTAAGCTAGACCAAATGACCTCACTCTAC
CATCCTACCCAAGAAATGCAGGCCTCACGTTTAGCTGGGTATCCACCCCATGTTCCTATATATCCTCCTATAGGTCAAAT
GGGAACTCAACACAAGCTGTCTCCATTCACTTTTATGATGCAAGGAGAATCTCTTCTCAACATGAAAAGAGAAAAATCCC
TAGTTAATGAAGTGATGGTATGCACCAACAAGATGAGCATAAACAACTTTGATGGAGCTACTAGTATTGGTGGTGGTAGT
AGTAGTGATGTTGCTATTGTTGTCCAGCAAGGGGAAACTACACACCCATTCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis