Browse Element(s) Details


Os.12931.1.S1_at

Description gb:AK099553.1
DB_XREF= gi:32984762
TID=Os.12931.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033K16, full insert sequence.
FL= gb:AK099553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2394011/11Transcription factor TFIIB repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23910OsAffx.26990.1.S1_at11/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23910Os.24936.1.A1_at9/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23924Os.9795.1.S1_at11/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924OsAffx.26991.1.S1_at10/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924Os.12284.1.S1_at1/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23940Os.12931.1.S1_at11/115+13694317..13703825Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g23950Os.53153.1.S1_at7/115+13705855..13707029TRAF-type zinc finger family protein
LOC_Os05g23960Os.48071.2.S1_x_at11/115+13717117..13720169pentatricopeptide, putative
LOC_Os05g23970OsAffx.30350.1.S1_at1/115+13722760..13726648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23970OsAffx.435.1.S1_at1/115+13722760..13726648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23980NANA5+13727991..13730717hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003702molecular_functionRNA polymerase II transcription factor activity
GO:0015377molecular_functioncation:chloride symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12931.1.S1_at--806--1311Chr05:13701750..13701774 (25 bp)
AGATGGCAAGAACGCAACACCCGCT
LOC_Os05g23940
Os.12931.1.S1_at--912--3251Chr05:13703430..13703454 (25 bp)
CAACGATGAGTATGGACAGGACACA
LOC_Os05g23940
Os.12931.1.S1_at--846--7731Chr05:13703476..13703500 (25 bp)
GGTGGTTATGATTATCCTGATTACA
LOC_Os05g23940
Os.12931.1.S1_at--246--10471Chr05:13703496..13703520 (25 bp)
TTACAACTATGATGGCTATGGTGAT
LOC_Os05g23940
Os.12931.1.S1_at--13--3711Chr05:13703511..13703535 (25 bp)
CTATGGTGATGGAGCCTACGGCGAT
LOC_Os05g23940
Os.12931.1.S1_at--888--4451Chr05:13703524..13703548 (25 bp)
GCCTACGGCGATTATGATGGTGTTG
LOC_Os05g23940
Os.12931.1.S1_at--672--10491Chr05:13703553..13703577 (25 bp)
TTAATACCCGATATATCAATGCTGG
LOC_Os05g23940
Os.12931.1.S1_at--468--1531Chr05:13703690..13703714 (25 bp)
AGCAGTGTAGCTCGTTGATTTCTCT
LOC_Os05g23940
Os.12931.1.S1_at--551--1591Chr05:13703698..13703722 (25 bp)
AGCTCGTTGATTTCTCTGGTGATAT
LOC_Os05g23940
Os.12931.1.S1_at--627--8771Chr05:13703745..13703769 (25 bp)
TGTATTATTTCATTCAGCGACCTAT
LOC_Os05g23940
Os.12931.1.S1_at--758--9591Chr05:13703754..13703778 (25 bp)
TCATTCAGCGACCTATACTTGCAAG
LOC_Os05g23940
Target Sequence 
AGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTTGGATCGA
AGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAAC
GATGAGTATGGACAGGACACAGGTGATGGTGAAACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTA
TGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTGTTACAAT
TTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGT
ACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATT
TCATTCAGCGACCTATACTTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis