Browse Element(s) Details


Os.10619.1.S1_at

Description gb:AK072881.1
DB_XREF= gi:32982904
TID=Os.10619.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148N15, full insert sequence.
FL= gb:AK100082.1 gb:AK072881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4477011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44720OsAffx.828.1.S1_x_at6/115+25914753..25916504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.447.1.S1_at7/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.22947.2.S1_x_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730Os.52609.1.S1_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44740OsAffx.828.1.S1_x_at6/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20017.1.S1_at5/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740Os.33601.3.S1_x_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.2.S1_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20631.1.S1_x_at2/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.1.S1_x_at1/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44750NANA5+25931406..25931809hypothetical protein
LOC_Os05g44760Os.3293.1.S1_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44760Os.20973.1.S1_s_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44770Os.10619.1.S1_at11/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.10619.1.S2_at6/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.11775.2.S1_x_at1/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44780Os.53939.1.S1_at11/115+25944983..25948154expressed protein
LOC_Os05g44786OsAffx.31479.4.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44786OsAffx.31479.1.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44792OsAffx.31479.5.S1_x_at9/115+25959745..25966219hypothetical protein
LOC_Os05g44792Os.49246.1.S1_x_at1/115+25959745..25966219hypothetical protein
LOC_Os05g44800Os.50163.1.S1_at11/115+25966667..25969496expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10619.1.S1_at--272--2731Chr05:25941834..25941858 (25 bp)
AAGAACTTGACGAGCCTGAAGACGG
LOC_Os05g44770
Os.10619.1.S1_at--266--7191Chr05:25941810..25941834 (25 bp)
GTCTGGCTGGCGCAGTGCAACCTCA
LOC_Os05g44770
Os.10619.1.S1_at--782--10651Chr05:25941777..25941801 (25 bp)
TTCCCCAGCTACGTCACAGAGATGA
LOC_Os05g44770
Os.10619.1.S1_at--112--6251Chr05:25941748..25941772 (25 bp)
GATGGAGTATCTCGACCTGTCCCAG
LOC_Os05g44770
Os.10619.1.S1_at--181--3891Chr05:25941732..25941756 (25 bp)
CTGTCCCAGAATTCATTCACCGGAA
LOC_Os05g44770
Os.10619.1.S1_at--19--1731Chr05:25941530..25941554 (25 bp)
ACCTAACTAACTTAGCCTTGATGAC
LOC_Os05g44770
Os.10619.1.S1_at--275--9991Chr05:25941518..25941542 (25 bp)
TAGCCTTGATGACGAACAACTTCTC
LOC_Os05g44770
Os.10619.1.S1_at--1151--3011Chr05:25941429..25941453 (25 bp)
AATCTCACCGGTCAGATTCCGGCGG
LOC_Os05g44770
Os.10619.1.S1_at--907--5611Chr05:25941321..25941345 (25 bp)
GACAACCGCCGGTTGTGGATCATCT
LOC_Os05g44770
Os.10619.1.S1_at--342--3831Chr05:25941289..25941313 (25 bp)
CGGCAACCGGTTGAACGGCTCAATT
LOC_Os05g44770
Os.10619.1.S1_at--440--3151Chr05:25941268..25941292 (25 bp)
AATTCCGGCGAGTCTTGCCACTTGC
LOC_Os05g44770
Target Sequence 
AAGAACTTGACGAGCCTGAAGACGGTCTGGCTGGCGCAGTGCAACCTCACCNGCGATTTCCCCAGCTACGTCACAGAGAT
GATGGAGATGGAGTATCTCGACCTGTCCCAGAATTCATTCACCGGAAGCATACCTCCTGGGATTTGGAACATTCCAAAGC
TGNCAGTACTTGTTCCNGTACACCAACCAGCTCACCGGCGACGTCGTCGTCAATGGNCAAGATTGGAGCAGCGAGCTTAA
TTTATCTCGNACATATCTGAGAACCAGCTGACTGGAACGATCCCAGAGAGCTTTGGAAGTTTGATGAACCTAACTAACTT
AGCCTTGATGACGAACAACTTCTCCGGCGAGATACCGGCGAGCCTTGCTCAGCTTCCATCGCTGGTGATAATGAAGCTGT
TCGAGAACAATCTCACCGGTCAGATTCCGGCGGAGCTCGGGAAGCACTCGCCATTTCTGAGAGACATCGAGGTCGACAAC
AACGACCTCACCGGGCCAATACCGGAGGGGGTCTGCGACAACCGCCGGTTGTGGATCATCTCCGCCGCCGGCAACCGGTT
GAACGGCTCAATTCCGGCGAGTCTTGCCACTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis