Browse Element(s) Details


Os.55701.1.S1_at

Description gb:AK108603.1
DB_XREF= gi:32993812
TID=Os.55701.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F09, full insert sequence.
FL= gb:AK108603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0922011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09164OsAffx.16205.1.S1_at2/1112+4789962..4793210hypothetical protein
LOC_Os12g09164OsAffx.25292.1.S1_at1/1112+4789962..4793210hypothetical protein
LOC_Os12g09180NANA12+4793546..4793836hypothetical protein
LOC_Os12g09190Os.23820.1.A1_at11/1112+4795465..4799050expressed protein
LOC_Os12g09200NANA12+4801307..4803874retrotransposon protein, putative, unclassified
LOC_Os12g09210Os.49901.1.S1_at11/1112+4806482..4809275retrotransposon protein, putative, unclassified, expressed
LOC_Os12g09220Os.55701.1.S1_at11/1112+4813524..4817470expressed protein
LOC_Os12g09230OsAffx.21870.2.S1_x_at5/1112+4830887..4832803hypothetical protein
LOC_Os12g09230OsAffx.21870.3.S1_x_at3/1112+4830887..4832803hypothetical protein
LOC_Os12g09240OsAffx.19570.1.S1_at11/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09240OsAffx.9949.1.S1_at1/1112+4835869..4840580NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55701.1.S1_at--142--3151Chr12:4813837..4813861 (25 bp)
AATTCTCACGGGATAAAAGCTCATT
LOC_Os12g09220
Os.55701.1.S1_at--492--2431Chr12:4813823..4813847 (25 bp)
AAAAGCTCATTCTCATTATCAGAAG
LOC_Os12g09220
Os.55701.1.S1_at--409--5991Chr12:4813785..4813809 (25 bp)
GAGACTTCATTGTGTGGTCATCTGA
LOC_Os12g09220
Os.55701.1.S1_at--1094--7811Chr12:4813770..4813794 (25 bp)
GGTCATCTGACGTTACTGATGTCTG
LOC_Os12g09220
Os.55701.1.S1_at--176--7871Chr12:4813744..4813768 (25 bp)
GGTTTGTATTTAGCCCAGCATGAAT
LOC_Os12g09220
Os.55701.1.S1_at--886--2991Chr12:4813722..4813746 (25 bp)
AATGTTGATGTTGCGTGACTCTACC
LOC_Os12g09220
Os.55701.1.S1_at--703--6671Chr12:4813713..4813737 (25 bp)
GTTGCGTGACTCTACCAAGTGTATG
LOC_Os12g09220
Os.55701.1.S1_at--498--6631Chr12:4813655..4813679 (25 bp)
GTTGTGTGACTATCAAGTGTATGAC
LOC_Os12g09220
Os.55701.1.S1_at--489--1111Chr12:4813640..4813664 (25 bp)
AGTGTATGACTGTATCGCTTGATTA
LOC_Os12g09220
Os.55701.1.S1_at--1079--5251Chr12:4813576..4813600 (25 bp)
GAATGTTATGTTGTGTGACTACTAA
LOC_Os12g09220
Os.55701.1.S1_at--131--10771Chr12:4813543..4813567 (25 bp)
TTGACTGTATGCTTGATTATCTTGA
LOC_Os12g09220
Target Sequence 
AATTCTCACGGGATAAAAGCTCATTCTCATTATCAGAAGAGAGAGTTTGGTGGAGACTTCATTGTGTGGTCATCTGACGT
TACTGATGTCTGGGGTTTGTATTTAGCCCAGCATGAATGTTGATGTTGCGTGACTCTACCAAGTGTATGGGGTTTGTATT
TAGCACAACATAAATGTTTGATGTTGTGTGACTATCAAGTGTATGACTGTATCGCTTGATTATTAGTTTGAGAAACTATG
TCTATGTCTGGGGGGGTTTATGAATGTTATGTTGTGTGACTACTAAGTAAGTGTTTGACTGTATGCTTGATTATCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis