Browse Element(s) Details


Os.52361.1.S1_at

Description gb:AK066653.1
DB_XREF= gi:32976671
TID=Os.52361.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071P05, full insert sequence.
FL= gb:AK066653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4336410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52361.1.S1_at--1031--3251Chr07:25963657..25963681 (25 bp)
CAACGGCGGCGTCAAATTCAATGTC
LOC_Os07g43364
Os.52361.1.S1_at--1144--9671Chr07:25963668..25963692 (25 bp)
TCAAATTCAATGTCCCGGTCGGCCG
LOC_Os07g43364
Os.52361.1.S1_at--892--1931Chr07:25963698..25963722 (25 bp)
ACGGCATTGTCTCGTCCTCCGAGGT
LOC_Os07g43364
Os.52361.1.S1_at--846--1031Chr07:25963719..25963743 (25 bp)
AGGTCGCCCAAAATATGCTCCCTGA
LOC_Os07g43364
Os.52361.1.S1_at--681--2951Chr07:25963748..25963772 (25 bp)
AAGGCCGACTTGGACAAGCTCACAG
LOC_Os07g43364
Os.52361.1.S1_at--451--10871Chr07:25963757..25963781 (25 bp)
TTGGACAAGCTCACAGCGCCAACTT
LOC_Os07g43364
Os.52361.1.S1_at--1009--1611Chr07:25963808..25963832 (25 bp)
AGCTGGTGATCCTCTCTGGCGCGTA
LOC_Os07g43364
Os.52361.1.S1_at--834--9451Chr07:25963822..25963846 (25 bp)
TCTGGCGCGTACTCCATAGGCAAGG
LOC_Os07g43364
Os.52361.1.S1_at--547--5871Chr07:25963879..25963903 (25 bp)
GAGCCGAACTCCGAGATCAATGCCA
LOC_Os07g43364
Os.52361.1.S1_at--84--3031NONE
AATGCCAACTAGCACGACAACGTCC
NONE
Os.52361.1.S1_at--222--4511Chr07:25963942..25963966 (25 bp)
GCCCCGAACGAGACGACGTTGGCGA
LOC_Os07g43364
Target Sequence 
CAACGGCGGCGTCAAATTCAATGTCCCGGTCGGCCGCCTCGACGGCATTGTCTCGTCCTCCGAGGTCGCCCAAAATATGC
TCCCTGACTCCAAGGCCGACTTGGACAAGCTCACAGCGCCAACTTCGCGGCGAAGGGATTCACCCCGGAGGAGCTGGTGA
TCCTCTCTGGCGCGTACTCCATAGGCAAGGCGCACTGCTTCTCCTTCAACGACCGCCTCACCGAGCCGAACTCCGAGATC
AATGCCAACTAGCACGACAACGTCCTGAACAAGACCTGCTACGCCGCCCCGAACGAGACGACGTTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis