Browse Element(s) Details


Os.7999.1.S1_at

Description gb:AK063254.1
DB_XREF= gi:32973272
TID=Os.7999.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C72082(E0949),AU091866(E0949)~similar to Arabidopsis thaliana chromosome 2, At2g22020~unknown protein (OJ1339_F05.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H07, full insert sequence.
FL= gb:AK063254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4338011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7999.1.S1_at--519--2131Chr07:25977696..25977720 (25 bp)
ACAGGTCCTGCTACGGCTGCATAAC
LOC_Os07g43380
Os.7999.1.S1_at--853--9251Chr07:25977729..25977753 (25 bp)
TCCTCAACAGCCAAAGGTGCTTCTT
LOC_Os07g43380
Os.7999.1.S1_at--755--2891Chr07:25977742..25977766 (25 bp)
AAGGTGCTTCTTCTGCAATGCAGTG
LOC_Os07g43380
Os.7999.1.S1_at--260--7771Chr07:25977766..25977790 (25 bp)
GGTGACTTCAGTTACCAGGATAGCT
LOC_Os07g43380
Os.7999.1.S1_at--877--3471Chr07:25977781..25977805 (25 bp)
CAGGATAGCTGATTCGCGCATCGAA
LOC_Os07g43380
Os.7999.1.S1_at--515--3531Chr07:25977799..25977823 (25 bp)
CATCGAATCTCGGTCACCTTTGGCA
LOC_Os07g43380
Os.7999.1.S1_at--1090--10791Chr07:25977818..25977842 (25 bp)
TTGGCACCGTAAACCCGAAGAGAAG
LOC_Os07g43380
Os.7999.1.S1_at--264--8731Chr07:25977862..25977886 (25 bp)
TGTCTTATCCATTTTTGCTCGATTT
LOC_Os07g43380
Os.7999.1.S1_at--250--2151Chr07:25977897..25977921 (25 bp)
ACAGCTCGGAGCCTCGGAGTTCTTC
LOC_Os07g43380
Os.7999.1.S1_at--517--3651Chr07:25977923..25977947 (25 bp)
CTTCTGCTTTCCTGGAAGACTGCAT
LOC_Os07g43380
Os.7999.1.S1_at--893--5571Chr07:25978159..25978183 (25 bp)
GAAAGGAGGTGTCAGATCTACATCA
LOC_Os07g43380
Target Sequence 
ACAGGTCCTGCTACGGCTGCATAACCAGGCACCTCCTCAACAGCCAAAGGTGCTTCTTCTGCAATGCAGTGGTGACTTCA
GTTACCAGGATAGCTGATTCGCGCATCGAATCTCGGTCACCTTTGGCACCGTAAACCCGAAGAGAAGAAAGATGGATCAT
GCCGNNTGTCTTATCCATTTTTGCTCGATTTGGAGGCGCAGACAGCTCGGAGCCTCGGAGTTCTTCCCTTCTGCTTTCCT
GGAAGACTGCATCGCCATGGTGGTGAAGTCAGAAAGGTTAATCTTTTCCCTTGTGTAAAGATCAGGTAATAGTTAAAACA
AAAAAAGATTCAATAACAGGATTGCAGAAGGAGGCTTCTGCACAAGGTGGGAAGCCAGTACCACCCAAAGAAGGATTCAC
AGAATCGTGAAATTTTTGTAGGTTGTAGGGAAAAATTCCATTGTAAATACGAGATATGAAACAGAAAGGAGGTGTCAGAT
CTACATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis