Browse Element(s) Details


OsAffx.28887.3.S1_at

Description tigr:9635.m04352
TID=OsAffx.28887.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g434107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28887.3.S1_at--859--4071NONE
CGACGCCGGCGAGTGTAGTATAATT
NONE
OsAffx.28887.3.S1_at--246--4171NONE
CGCCGGCGAGTGTAGTATAATTCCA
NONE
OsAffx.28887.3.S1_at--1141--6931Chr07:25990650..25990674 (25 bp)
GTAGTATAATTCCACTTGATGTTCA
LOC_Os07g43410
OsAffx.28887.3.S1_at--1109--3611Chr07:25990664..25990688 (25 bp)
CTTGATGTTCATGCCTGGTGGTTAC
LOC_Os07g43410
OsAffx.28887.3.S1_at--1098--6271Chr07:25990667..25990691 (25 bp)
GATGTTCATGCCTGGTGGTTACATA
LOC_Os07g43410
OsAffx.28887.3.S1_at--589--6731Chr07:25990670..25990694 (25 bp)
GTTCATGCCTGGTGGTTACATATTG
LOC_Os07g43410
OsAffx.28887.3.S1_at--1018--591Chr07:25990674..25990698 (25 bp)
ATGCCTGGTGGTTACATATTGCAGT
LOC_Os07g43410
OsAffx.28887.3.S1_at--503--7731Chr07:25990680..25990704 (25 bp)
GGTGGTTACATATTGCAGTGTCTGT
LOC_Os07g43410
OsAffx.28887.3.S1_at--500--7891Chr07:25990683..25990705 (23 bp)
GGTTACATATTGCAGTGTCTGTGCA
LOC_Os07g43410
OsAffx.28887.3.S1_at--564--10731NONE
TTGCAGTGTCTGTGCAATGCTGCTT
NONE
OsAffx.28887.3.S1_at--152--5031NONE
GCAGTGTCTGTGCAATGCTGCTTTC
NONE
Target Sequence 
CGACGCCGGCGAGTGTAGTATAATTCCACTTGATGTTCATGCCTGGTGGTTACATATTGCAGTGTCTGTGCAATGCTGCT
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28887.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis