Browse Element(s) Details


Os.41128.1.S1_at

Description gb:NM_193046.1
DB_XREF= gi:34913175
GEN=P0506F02.8
TID=Os.41128.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0506F02.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0506F02.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4343011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41128.1.S1_at--139--10691Chr07:26003625..26003649 (25 bp)
TTGCTGGAGGTTGTCGGTATGACTC
LOC_Os07g43430
Os.41128.1.S1_at--301--6911Chr07:26003641..26003660 (20 bp)
GTATGACTCCAAGCGACAGGCGGGC
LOC_Os07g43430
Os.41128.1.S1_at--823--5031Chr07:26005194..26005218 (25 bp)
GCAGACAGGTGCTCCAGGTTATCAA
LOC_Os07g43430
Os.41128.1.S1_at--57--7311Chr07:26005202..26005226 (25 bp)
GTGCTCCAGGTTATCAAGACTTCAA
LOC_Os07g43430
Os.41128.1.S1_at--187--1411Chr07:26005218..26005242 (25 bp)
AGACTTCAACGACATCAGTTCTCTC
LOC_Os07g43430
Os.41128.1.S1_at--991--8491Chr07:26005252..26005276 (25 bp)
TGGCAGCCAAGTGCCGATCATCCTA
LOC_Os07g43430
Os.41128.1.S1_at--204--571Chr07:26005271..26005295 (25 bp)
ATCCTACTGCCACAGCTCGAGGCAT
LOC_Os07g43430
Os.41128.1.S1_at--143--1771Chr07:26005308..26005332 (25 bp)
ACCTGCTGACATTCGATCACGGGAA
LOC_Os07g43430
Os.41128.1.S1_at--796--6471Chr07:26005333..26005357 (25 bp)
GATACTGTCATCCAAGCAGCCAGGG
LOC_Os07g43430
Os.41128.1.S1_at--149--5391Chr07:26005384..26005408 (25 bp)
GAAGCAACAACACCTTCAGCTCAGC
LOC_Os07g43430
Os.41128.1.S1_at--549--3811Chr07:26005492..26005516 (25 bp)
CTGCCCATTTTCAGAAGCATCTGCC
LOC_Os07g43430
Target Sequence 
TTGCTGGAGGTTGTCGGTATGACTCCAAGCGACAGGCGGGCGGGCAGACAGGTGCTCCAGGTTATCAAGACTTCAACGAC
ATCAGTTCTCTCTTCTCCCCATGGCAGCCAAGTGCCGATCATCCTACTGCCACAGCTCGAGGCATCCCCAACAAGCCACC
TGCTGACATTCGATCACGGGAAGATACTGTCATCCAAGCAGCCAGGGCAGANNTTTCAACACCAAAACCTGATGAAGCAA
CAACACCTTCAGCTCAGCCAGCATNTGCGCAGGCAGAGCNAATTGAGGAGGATGAAGAGTTGATAATTCAAACTCTTTAT
GGTCAAAGCAATGGACGCAGNCTGCCCATTTTCAGAAGCATCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis