Browse Element(s) Details


OsAffx.28887.1.S1_at

Description tigr:9635.m04359
TID=OsAffx.28887.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g43540OsAffx.16697.1.S1_at10/117+26042848..26045797origin recognition complex subunit 6, putative, expressed
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28887.1.S1_at--490--8731Chr07:26024921..26024945 (25 bp)
TGTACCCCGAGGTGGTGAACTTGGC
LOC_Os07g43480
OsAffx.28887.1.S1_at--732--831Chr07:26024874..26024898 (25 bp)
ATGGATCGGTGCACGCTGGATGATC
LOC_Os07g43480
OsAffx.28887.1.S1_at--869--6291Chr07:26024856..26024880 (25 bp)
GATGATCTCCATGGATTAGGCCGGG
LOC_Os07g43480
OsAffx.28887.1.S1_at--838--431Chr07:26024803..26024827 (25 bp)
ATCTTCATCTGTTCGTCAGGGCAAC
LOC_Os07g43480
OsAffx.28887.1.S1_at--328--4731Chr07:26024755..26024779 (25 bp)
GCTGGGCTTACACCAAGACATGACA
LOC_Os07g43480
OsAffx.28887.1.S1_at--685--991Chr07:26024729..26024753 (25 bp)
AGGATTACCTGATGCAATACTTCGG
LOC_Os07g43480
OsAffx.28887.1.S1_at--368--331Chr07:26024713..26024737 (25 bp)
ATACTTCGGTGACGTCGAGAGCTGC
LOC_Os07g43480
OsAffx.28887.1.S1_at--401--6011Chr07:26024697..26024721 (25 bp)
GAGAGCTGCGTCGTGTACATGGCCA
LOC_Os07g43480
OsAffx.28887.1.S1_at--757--311Chr07:26024588..26024612 (25 bp)
ATACGCCGCGAGACGATCAGGTGGT
LOC_Os07g43480
OsAffx.28887.1.S1_at--908--10591Chr07:26024552..26024576 (25 bp)
TTCTGCTCCAGTATACCATGCTGAG
LOC_Os07g43480
OsAffx.28887.1.S1_at--773--10011Chr07:26024525..26024549 (25 bp)
TAGACGACCCACTAGCTCATGAAGA
LOC_Os07g43480
Target Sequence 
TGTACCCCGAGGTGGTGAACTTGGCGGTCGCTCGCGCCCACCGAAGGATGGATCGGTGCACGCTGGATGATCTCCATGGA
TTAGGCCGGGGATTGGTCGAGCTCGAATCACTCCGGCCATCTTCATCTGTTCGTCAGGGCAACCTCGCACGCCGGGGCTT
CATCCTGCTGGGCTTACACCAAGACATGACAGAGGATTACCTGATGCAATACTTCGGTGACGTCGAGAGCTGCGTCGTGT
ACATGGCCAGGAGGGCGGCTCTGGTCATCTTCTCCACCCCAGAAGCTGCAGCCAGAGCACTGAGGACGCCCATGGCGGAT
GGTCGCAGCCGGGATACGCCGCGAGACGATCAGGTGGTGGACTATCTGCTTCTGCTCCAGTATACCATGCTGAGGGTAGA
CGACCCACTAGCTCATGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis