Browse Element(s) Details


OsAffx.16697.1.S1_at

Description tigr:9635.m04365
TID=OsAffx.16697.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Origin recognition complex subunit 6 (ORC6)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4354010/11origin recognition complex subunit 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g43540OsAffx.16697.1.S1_at10/117+26042848..26045797origin recognition complex subunit 6, putative, expressed
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed
LOC_Os07g43570Os.6898.1.S1_at11/117+26057670..26061466Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16697.1.S1_at--212--3991Chr07:26045180..26045204 (25 bp)
CGTGAATTGGGCATCCAGTTCGGCT
LOC_Os07g43540
OsAffx.16697.1.S1_at--968--3431Chr07:26045165..26045189 (25 bp)
CAGTTCGGCTGTGTCAGGCTGATAC
LOC_Os07g43540
OsAffx.16697.1.S1_at--144--3491Chr07:26045151..26045175 (25 bp)
CAGGCTGATACCTTTCGTGCAGAAG
LOC_Os07g43540
OsAffx.16697.1.S1_at--961--7331Chr07:26045140..26045159 (20 bp)
GTGCAGAAGGGATTGTCGCTCTACA
LOC_Os07g43540
OsAffx.16697.1.S1_at--177--2931Chr07:26044943..26044967 (25 bp)
AAGGAGCGTTTTTTGGCGGCACTGC
LOC_Os07g43540
OsAffx.16697.1.S1_at--387--5171Chr07:26044904..26044928 (25 bp)
GCAAGCACTGACTTTGGTCGACCAG
LOC_Os07g43540
OsAffx.16697.1.S1_at--757--1111Chr07:26044881..26044905 (25 bp)
AGTGTTCACTGCAGCTGCATTCTAT
LOC_Os07g43540
OsAffx.16697.1.S1_at--535--6831Chr07:26044534..26044558 (25 bp)
GTTTCAACATCCATGGCAGACCTTT
LOC_Os07g43540
OsAffx.16697.1.S1_at--772--1431Chr07:26044272..26044296 (25 bp)
AGAACTGCTGGATGTTTTGCCTAGC
LOC_Os07g43540
OsAffx.16697.1.S1_at--827--5851NONE
GACCAAGATGAACTAGACCTGCCAA
NONE
OsAffx.16697.1.S1_at--332--8951Chr07:26043400..26043424 (25 bp)
TGACTGGAAGTCATCGGTTCTCTCC
LOC_Os07g43540
Target Sequence 
CGTGAATTGGGCATCCAGTTCGGCTGTGTCAGGCTGATACCTTTCGTGCAGAAGGGATTGTCGCTCTACAAGGAGCGTTT
TTTGGCGGCACTGCCACCTTCTCGCCGGGCAAGCACTGACTTTGGTCGACCAGTGTTCACTGCAGCTGCATTCTATTTAT
GTGCAAAGAGGCATAAGCTTAAAGTTGACAAGCTGAAGTTGATTGATTTATGCGGAACATCTAGTTCTGAATTTACAACT
GTTTCAACATCCATGGCAGACCTTTGCTTTGATGTTTTTGGGATTGCCAAAGAGAAGAAGGATGCAAAGTCCATAAAAGG
GAGTAGAGAACTGCTGGATGTTTTGCCTAGCAAAAGGAAACATGATGACGACAGTGATTCATCTGGTGAATCCTCAGGGG
ATGACCAAGATGAACTAGACCTGCCAACTTACAAAAGACACAAGAAAATGGAAAAGGAAGCTTACAATGACTGGAAGTCA
TCGGTTCTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis