Browse Element(s) Details


Os.6898.1.S1_at

Description gb:AK111564.1
DB_XREF= gi:37988227
TID=Os.6898.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) serinethreonine kinase-like protein (P0506F02.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073N09, full insert sequence.
FL= gb:AK111564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4357011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g43540OsAffx.16697.1.S1_at10/117+26042848..26045797origin recognition complex subunit 6, putative, expressed
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed
LOC_Os07g43570Os.6898.1.S1_at11/117+26057670..26061466Protein kinase domain containing protein, expressed
LOC_Os07g43580Os.25588.2.S1_x_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43580Os.25588.1.S1_a_at11/117+26073624..26075445Myb30, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6898.1.S1_at--113--651Chr07:26058236..26058260 (25 bp)
ATGCATCAACATTGGGCTTCTGTGC
LOC_Os07g43570
Os.6898.1.S1_at--24--771Chr07:26058181..26058205 (25 bp)
ATGTCAGCGATCATCCTTATGCTCA
LOC_Os07g43570
Os.6898.1.S1_at--923--10411Chr07:26058165..26058189 (25 bp)
TTATGCTCAGTAGTGGCACCGTCAC
LOC_Os07g43570
Os.6898.1.S1_at--853--4291Chr07:26058129..26058153 (25 bp)
CCTACAGGCCGGCATATATCTTTGG
LOC_Os07g43570
Os.6898.1.S1_at--520--3191Chr07:26058081..26058105 (25 bp)
CAATGGACGTTCCATTACCTTCGGG
LOC_Os07g43570
Os.6898.1.S1_at--111--7571Chr07:26058058..26058082 (25 bp)
GGGCCTCATTCGTCGATCACTGAGC
LOC_Os07g43570
Os.6898.1.S1_at--353--2311Chr07:26058021..26058045 (25 bp)
AAAGTCATTGGTCATCTAACGATAG
LOC_Os07g43570
Os.6898.1.S1_at--965--131Chr07:26057925..26057949 (25 bp)
ATTAGCGGTTACATGCGCGACCATC
LOC_Os07g43570
Os.6898.1.S1_at--745--4611Chr07:26057909..26057933 (25 bp)
GCGACCATCTTACTCTCTGTTAGAG
LOC_Os07g43570
Os.6898.1.S1_at--208--4971Chr07:26057885..26057909 (25 bp)
GCATCAACGACAACCTGCGTGAAGT
LOC_Os07g43570
Os.6898.1.S1_at--553--7771Chr07:26057847..26057871 (25 bp)
GGTGCAGGTCTCGTACGATGACGTA
LOC_Os07g43570
Target Sequence 
ATGCATCAACATTGGGCTTCTGTGCGTCCAGCAAAACCCAGTGGACCGGCCGCCGATGTCAGCGATCATCCTTATGCTCA
GTAGTGGCACCGTCACTCTGCAAGCACCCTACAGGCCGGCATATATCTTTGGCAGGAACAGGAGCTACACGGAAACAATG
GACGTTCCATTACCTTCGGGGCCTCATTCGTCGATCACTGAGCTTGAACCTAGATAAAGTCATTGGTCATCTAACGATAG
AAATGGATGGGGTTGGAATTNATCGGTACCCGTTGTCTCAGTCTANTTAAGTGTCACGTCTTTAGTTGAAAATTAGCGGT
TACATGCGCGACCATCTTACTCTCTGTTAGAGCATCAACGACAACCTGCGTGAAGTCATCAAAGCNCTAGGTGCAGGTCT
CGTACGATGACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis