Browse Element(s) Details


Os.25588.2.S1_x_at

Description gb:AK101674.1
DB_XREF= gi:32986883
TID=Os.25588.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C28158(C60218)~myb-like protein (P0506F02.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058E05, full insert sequence.
FL= gb:AK101674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4358011/11Myb30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed
LOC_Os07g43570Os.6898.1.S1_at11/117+26057670..26061466Protein kinase domain containing protein, expressed
LOC_Os07g43580Os.25588.2.S1_x_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43580Os.25588.1.S1_a_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43590OsAffx.16698.2.S1_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.2.S1_s_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.1.S1_at3/117+26093374..26093963hypothetical protein
LOC_Os07g43600OsAffx.21305.1.S1_at11/117+26096444..26098219Ribonuclease T2 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25588.2.S1_x_at--541--4231Chr07:26074249..26074273 (25 bp)
CCGACGGCATCGAGAGTGGCAGCTT
LOC_Os07g43580
Os.25588.2.S1_x_at--276--4711Chr07:26074217..26074241 (25 bp)
GCGGCCATGGATTACACCTTCTAAT
LOC_Os07g43580
Os.25588.2.S1_x_at--455--8911Chr07:26074147..26074171 (25 bp)
TGAGCAGCGAGTTCATCACTAGCCC
LOC_Os07g43580
Os.25588.2.S1_x_at--1105--2171Chr07:26074095..26074119 (25 bp)
ACACAGATCCTGAAGTCCTCTTGAT
LOC_Os07g43580
Os.25588.2.S1_x_at--3--1151Chr07:26074082..26074106 (25 bp)
AGTCCTCTTGATCTTGATTTCTCTC
LOC_Os07g43580
Os.25588.2.S1_x_at--46--6571Chr07:26074055..26074079 (25 bp)
GATTAATCACTTGGGATCTGCGTAG
LOC_Os07g43580
Os.25588.2.S1_x_at--340--471Chr07:26074040..26074064 (25 bp)
ATCTGCGTAGTTTTCGCTTAGGAAA
LOC_Os07g43580
Os.25588.2.S1_x_at--504--6211Chr07:26073998..26074022 (25 bp)
GAGGCGTTGCTCTACTGTTAATTGT
LOC_Os07g43580
Os.25588.2.S1_x_at--1139--6751Chr07:26073982..26074006 (25 bp)
GTTAATTGTTGTTACTGCGACTGAA
LOC_Os07g43580
Os.25588.2.S1_x_at--1086--2831Chr07:26073890..26073914 (25 bp)
AAGTAGATCTCCACACGTTTGCAAG
LOC_Os07g43580
Os.25588.2.S1_x_at--1129--10171Chr07:26073827..26073851 (25 bp)
TATACTGCTGTATCACTAACTCTAG
LOC_Os07g43580
Target Sequence 
CCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTCTAATCCACACCACCACCAAACCATGCA
AGAATCGTAGCGTAAGCGAGAGTGAGCAGCGAGTTCATCACTAGCCCAACCTGAAAAAAGAAAAATCGAAAACTACACAG
ATCCTGAAGTCCTCTTGATCTTGATTTCTCTCTTGATTAATCACTTGGGATCTGCGTAGTTTTCGCTTAGGAAAAAAAAA
GAAGGGGATTAGAGGCGTTGCTCTACTGTTAATTGTTGTTACTGCGACTGAATATGGTCATGGTAATTTTGGTTTTTAGC
TTGGATTAATCAAATCACTAGTAACAAGGTTTACTAATTAAGTAGATCTCCACACGTTTGCAAGATGCAGCGAGTGTGAG
AGAGAATAACGTGAGTATGTCATATACTGCTGTATCACTAACTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25588.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis