Browse Element(s) Details


OsAffx.21305.1.S1_at

Description tigr:9635.m04372
TID=OsAffx.21305.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribonuclease T2 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4360011/11Ribonuclease T2 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43580Os.25588.2.S1_x_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43580Os.25588.1.S1_a_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43590OsAffx.16698.2.S1_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.2.S1_s_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.1.S1_at3/117+26093374..26093963hypothetical protein
LOC_Os07g43600OsAffx.21305.1.S1_at11/117+26096444..26098219Ribonuclease T2 family protein
LOC_Os07g43610OsAffx.21304.1.S1_at10/117+26104575..26107569hypothetical protein
LOC_Os07g43610Os.55580.1.S1_at1/117+26104575..26107569hypothetical protein
LOC_Os07g43630Os.45173.1.S1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630OsAffx.20257.1.S1_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630Os.47130.4.A1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009611biological_processresponse to wounding
GO:0009718biological_processanthocyanin biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0005576cellular_componentextracellular region
GO:0005622cellular_componentintracellular
GO:0004521molecular_functionendoribonuclease activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21305.1.S1_at--692--1871Chr07:26097648..26097672 (25 bp)
ACGAGTGCGAGTACGAGCCCCGGCT
LOC_Os07g43600
OsAffx.21305.1.S1_at--344--2251Chr07:26097679..26097703 (25 bp)
AAATAACTTCACCATCCGTGGCCTA
LOC_Os07g43600
OsAffx.21305.1.S1_at--1150--8471Chr07:26097722..26097746 (25 bp)
TGGCGGCCGGAGTACTGCAACATCA
LOC_Os07g43600
OsAffx.21305.1.S1_at--518--7771Chr07:26097781..26097805 (25 bp)
GGTGAAGCCGCTGAACCAGTCATGG
LOC_Os07g43600
OsAffx.21305.1.S1_at--665--2631Chr07:26097830..26097854 (25 bp)
AACCTCGAGCTGTGGAGCCACGAGT
LOC_Os07g43600
OsAffx.21305.1.S1_at--901--8131Chr07:26097919..26097943 (25 bp)
GGACAAGCTTAAGCTCACCAACCTT
LOC_Os07g43600
OsAffx.21305.1.S1_at--967--5951Chr07:26097983..26098007 (25 bp)
GAGAAGACCTACACGCTCGGCGAGA
LOC_Os07g43600
OsAffx.21305.1.S1_at--249--9971Chr07:26098046..26098070 (25 bp)
TACCTCCGGTGTAGCCAGAACGAGC
LOC_Os07g43600
OsAffx.21305.1.S1_at--723--5991Chr07:26098082..26098106 (25 bp)
GAGACGCTGCTGTACGAGGTTTTGC
LOC_Os07g43600
OsAffx.21305.1.S1_at--960--1791Chr07:26098095..26098119 (25 bp)
ACGAGGTTTTGCAGTGCGTCGACCG
LOC_Os07g43600
OsAffx.21305.1.S1_at--943--9691Chr07:26098137..26098161 (25 bp)
TCAACTGCACGACGCCGTACTGGGT
LOC_Os07g43600
Target Sequence 
ACGAGTGCGAGTACGAGCCCCGGCTACCCCCAAATAACTTCACCATCCGTGGCCTATGGCCGAGCTACGAGGAATGGCGG
CCGGAGTACTGCAACATCAGCGACCGCCTCGACCCGGGGCAGATCCAGGACCTGGTGAAGCCGCTGAACCAGTCATGGCC
GTCGCTGCTGCGCAACGAGACCAACCTCGAGCTGTGGAGCCACGAGTGGAGCAAGCACGGCACCTGCTCCAACCTCAGCC
AGCACGGCTACTTCGCCGCCGCGCTCGCGCTGGACAAGCTTAAGCTCACCAACCTTACCAAGATCCTCGCCGACGGCGGC
GTCGTGCCGTCCGACGAGAAGACCTACACGCTCGGCGAGATCAGCGACGCACTCGCCAAGGGCACTGGGTTCAGCACCTA
CCTCCGGTGTAGCCAGAACGAGCTCAAGTACGGGGAGACGCTGCTGTACGAGGTTTTGCAGTGCGTCGACCGCTCCGGCG
AGAAGCTCGTCAACTGCACGACGCCGTACTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis