Browse Element(s) Details


Os.45229.1.S1_at

Description gb:AK120311.1
DB_XREF= gi:37989934
TID=Os.45229.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0090P23.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055G03, full insert sequence.
FL= gb:AK120311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g162201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16160NANA2+9191843..9192277hypothetical protein
LOC_Os02g16170Os.47999.3.S1_x_at1/112+9192966..9196433retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16180Os.45173.5.S1_x_at4/112+9198806..9199597retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16190NANA2+9199867..9204279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16200NANA2+9207188..9210329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16210OsAffx.29742.3.S1_x_at11/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.1.S1_x_at6/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.2.S1_x_at5/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.22896.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210Os.47114.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16220OsAffx.29675.1.S1_x_at11/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.4.S1_x_at6/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.2.S1_x_at4/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.3.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220Os.45229.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16230NANA2+9223456..9223827hypothetical protein
LOC_Os02g16240OsAffx.24649.3.S1_at10/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16240OsAffx.24649.1.S1_at5/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16250OsAffx.2640.1.S1_at11/112+9238437..9239234NBS-LRR disease resistance protein, putative
LOC_Os02g16260OsAffx.24277.1.S1_at9/112+9240038..9243851Xa1, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45229.1.S1_at--101--7551Chr03:16337942..16337966 (25 bp)
GTGGCTGCCGTCACCGTGTCCACTG
NONE
Os.45229.1.S1_at--452--4131Chr03:16338006..16338030 (25 bp)
CGCATCCGTGCATTTGGCTGGGACA
NONE
Os.45229.1.S1_at--718--211Chr03:16338017..16338041 (25 bp)
ATTTGGCTGGGACACTGCCTCGTTA
NONE
Os.45229.1.S1_at--995--8631Chr03:16338024..16338048 (25 bp)
TGGGACACTGCCTCGTTATCACCGC
NONE
Os.45229.1.S1_at--138--4191Chr03:16338045..16338069 (25 bp)
CCGCCTCACCGGCAAGAAGAAAGCT
NONE
Os.45229.1.S1_at--372--6691Chr03:16338141..16338165 (25 bp)
GTTCCAATAAGTATATGATATCTCT
NONE
Os.45229.1.S1_at--509--252Chr03:16338158..16338182 (25 bp)
ATATCTCTATTGTATCAGTTGACTA
NONE
Os.45229.1.S1_at--705--1231Chr03:16338174..16338198 (25 bp)
AGTTGACTATAATGGTTACTGCAGT
NONE
Os.45229.1.S1_at--329--7891Chr03:16338187..16338211 (25 bp)
GGTTACTGCAGTGTGTCAATATATT
NONE
Os.45229.1.S1_at--731--7471Chr03:16338197..16338221 (25 bp)
GTGTGTCAATATATTGCAGCCGATA
NONE
Os.45229.1.S1_at--111--74Chr03:22467588..22467611 (24 bp)
ATTGCAGCCGATAGTTGGCTCTGTC
NONE
Target Sequence 
GTGGCTGCCGTCACCGTGTCCACTGCAGCTGCCGCCGTCTCCCTCGCCCCGGCCTCGCCCCAGCCGCATCCGTGCATTTG
GCTGGGACACTGCCTCGTTATCACCGCCTCACCGGCAAGAAGAAAGCTGAAAGGGATGGATGGGAGCAAGCAAGAGAATA
GAGGGATGGTGGGCCCATAAAAATAAAAAAAATATTTGTGTTCCAATAAGTATATGATATCTCTATTGTATCAGTTGACT
ATAATGGTTACTGCAGTGTGTCAATATATTGCAGCCGATAGTTGGCTCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis