Browse Element(s) Details


Os.54621.1.S1_at

Description gb:AK106269.1
DB_XREF= gi:32991478
TID=Os.54621.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G07, full insert sequence.
FL= gb:AK106269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g508009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g50860Os.21073.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50860Os.52685.1.S1_at11/114+29858539..29861314expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54621.1.S1_at--994--711NONE
ATGTTGCTAGCATCCCCAAATGTGG
NONE
Os.54621.1.S1_at--1034--2291Chr04:29834213..29834237 (25 bp)
AAATGTGGCTTCTTTCTTTGGCTGC
LOC_Os04g50800
Os.54621.1.S1_at--572--10871Chr04:29834196..29834220 (25 bp)
TTGGCTGCAGCGCTACTAATATGTT
LOC_Os04g50800
Os.54621.1.S1_at--784--7671Chr04:29834101..29834125 (25 bp)
GGGTTTTGGCCATTGTAGCGACCAA
LOC_Os04g50800
Os.54621.1.S1_at--687--71Chr04:29834039..29834063 (25 bp)
ATTGCCTCGGCACTACAAAGACTTG
LOC_Os04g50800
Os.54621.1.S1_at--894--6291Chr04:29833920..29833944 (25 bp)
GATGATCTGCATATTCTTCCTCTGT
LOC_Os04g50800
Os.54621.1.S1_at--1099--9771Chr04:29833699..29833723 (25 bp)
TAAGGGCTGTTCTGGTGACTCGCAA
LOC_Os04g50800
Os.54621.1.S1_at--1001--1971Chr04:29833632..29833656 (25 bp)
ACTGCATCTCCAGTCTAGTCTGTAT
LOC_Os04g50800
Os.54621.1.S1_at--56--7191Chr04:29833615..29833639 (25 bp)
GTCTGTATTAGGTTACTGCCTCGTC
LOC_Os04g50800
Os.54621.1.S1_at--660--7211Chr04:29833593..29833617 (25 bp)
GTCGTTCCAGTATTTCTGTATCCTC
LOC_Os04g50800
Os.54621.1.S1_at--137--3731Chr04:29833563..29833587 (25 bp)
CTAATCCGAGTATCCAAGTTGCCGT
NONE
Target Sequence 
ATGTTGCTAGCATCCCCAAATGTGGCTTCTTTCTTTGGCTGCAGCGCTACTAATATGTTAATACAACTTGGAGAAGCAGC
TCCAAAGCAGAGAAATATCAGTGGCTGCTTCAAGTGCTTCAAGATTGCTGGGTTTTGGCCATTGTAGCGACCAAATTTGG
AACACTGGTAAAAAGGCTTACGTATATAAAAATTGCCTCGGCACTACAAAGACTTGTAAGCTTTGTGAGATTAATCCAAA
AGTACCAAGCGGAGGTAGTCACAAGGGCGAAGGGTATGTCAAGCCAGGGGTTCAAAAATTCATGGTCACTGATGATCTGC
ATATTCTTCCTCTGTCCTTGACAAGCACCCTACAAGTAGTTAGTGAATCCAAGGTACAGGCTAAGGATCTCGTGGAGAAA
GAATTCACTCTAACAAAAATCCAGGTTATGGAGCTTCTAAGGGCTGTTCTGGTGACTCGCAACACACTCAGCTCCGTGCT
TCTGCCTCCCAAGAAGAAGAAGAGACTGCATCTCCAGTCTAGTCTGTATTAGGTTACTGCCTCGTCGTTCCAGTATTTCT
GTATCCTCAAGTACTAATCCGAGTATCCAAGTTGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis