Browse Element(s) Details


Os.21073.1.S1_at

Description gb:AK067781.1
DB_XREF= gi:32977799
TID=Os.21073.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120J11, full insert sequence.
FL= gb:AK067781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5086011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g50860Os.21073.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50860Os.52685.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50870Os.780.1.S1_a_at11/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.53256.1.S1_at10/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.7070.1.S1_at8/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010224biological_processresponse to UV-B
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21073.1.S1_at--198--5891Chr04:29859101..29859125 (25 bp)
GAGCGATTCCAACTCGAGAAGAACA
LOC_Os04g50860
Os.21073.1.S1_at--639--5491Chr04:29859081..29859105 (25 bp)
GAACATGAAGACTCTCCCGCCAAAT
LOC_Os04g50860
Os.21073.1.S1_at--76--1771Chr04:29859031..29859055 (25 bp)
ACCTGAAGCCTAATCCATTCTGGGA
LOC_Os04g50860
Os.21073.1.S1_at--916--1591Chr04:29858932..29858956 (25 bp)
AGCTGAGGTCCTATGTTTCACGCTT
LOC_Os04g50860
Os.21073.1.S1_at--617--10331Chr04:29858917..29858941 (25 bp)
TTTCACGCTTGGATGCTGATACGTT
LOC_Os04g50860
Os.21073.1.S1_at--855--2431Chr04:29858868..29858892 (25 bp)
AAAAGAGGCCGTCTCACTGATAGAG
LOC_Os04g50860
Os.21073.1.S1_at--484--2471Chr04:29858838..29858862 (25 bp)
AACACAGGCGTTGTTTGGACGGCCA
LOC_Os04g50860
Os.21073.1.S1_at--80--2531Chr04:29858754..29858778 (25 bp)
AACTTTCATAGAACTCACCCATCTT
LOC_Os04g50860
Os.21073.1.S1_at--1007--3551Chr04:29858735..29858759 (25 bp)
CATCTTGTTTTGGAGGCAGCTGCTT
LOC_Os04g50860
Os.21073.1.S1_at--758--931Chr04:29858722..29858746 (25 bp)
AGGCAGCTGCTTTTGGATCCTTTTT
LOC_Os04g50860
Os.21073.1.S1_at--210--6371Chr04:29858596..29858620 (25 bp)
GATCCAGCTCTGATATGCTTTCAGT
LOC_Os04g50860
Target Sequence 
GAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAATCCTAAGCAACAGATAGTACTTGAAAACCTGAAGCC
TAATCCATTCTGGGATATGGAATCATTGGTGCAAATTACACCTGATGGGGAGGAGATCGATTTGGATGATGAAGAATCAA
ATCCNAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCAAAGGTATGCTACTATCAGATCAAAAGAG
GCCGTCTCACTGATAGAGAAGCAAACACAGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAA
TGCAAAGGATGGTCAAATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCAGCTGCTTTTGGATCCT
TTTTGTGGGAAGCTGAGAGTCATGTAGAATCCAAATACCATTTTGTTAACAGTTAATCGTGTATTCGTTANATCTGGAAA
TGATTTGTGTACACTGGATAGGATAGGATCCAGCTCTGATATGCTTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis