Browse Element(s) Details


Os.53256.1.S1_at

Description gb:AK071616.1
DB_XREF= gi:32981639
TID=Os.53256.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105I09, full insert sequence.
FL= gb:AK071616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5087010/11Elongation factor Tu C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g50860Os.21073.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50860Os.52685.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50870Os.780.1.S1_a_at11/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.53256.1.S1_at10/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.7070.1.S1_at8/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50880OsAffx.14360.1.S1_at11/114+29886700..29889804Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os04g50890Os.8400.1.S1_at11/114+29890895..29894578secretory carrier membrane protein, putative, expressed
LOC_Os04g50900OsAffx.26555.1.S1_at11/114+29896282..29896741hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53256.1.S1_at--296--10392Chr12:12936963..12936994 (25 bp)
TTTTGCTGACAGCTTCTACAGTGAA
NONE
Os.53256.1.S1_at--159--5411Chr04:29872295..29872439 (25 bp)
GAAGCTCAGATTCTTGCTTCTCCTG
LOC_Os04g50870
Os.53256.1.S1_at--1149--4291Chr04:29872256..29872280 (25 bp)
CCTACTCATCTACTTTGATTTGTCT
LOC_Os04g50870
Os.53256.1.S1_at--780--7151Chr04:29872235..29872259 (25 bp)
GTCTATATGATTTCCTGGCCATGGT
LOC_Os04g50870
Os.53256.1.S1_at--798--8451Chr04:29872220..29872244 (25 bp)
TGGCCATGGTCGCTATGGTTGCTCT
LOC_Os04g50870
Os.53256.1.S1_at--791--9111Chr04:29872121..29872145 (25 bp)
TGCTGCTCACTCTAGGCTGCTACGG
LOC_Os04g50870
Os.53256.1.S1_at--576--4991Chr04:29872086..29872110 (25 bp)
GCATGACTGAGGTGTTTACTATTGA
LOC_Os04g50870
Os.53256.1.S1_at--171--6831Chr04:29872073..29872097 (25 bp)
GTTTACTATTGATATGCTACCTATG
LOC_Os04g50870
Os.53256.1.S1_at--608--8831Chr04:29872050..29872074 (25 bp)
TGATTATTTCTCTGTCTTCAGCTGA
LOC_Os04g50870
Os.53256.1.S1_at--221--9571Chr04:29872036..29872060 (25 bp)
TCTTCAGCTGAGTCTCTAGCCGAAT
LOC_Os04g50870
Os.53256.1.S1_at--343--3711Chr04:29872021..29872045 (25 bp)
CTAGCCGAATTGCTGGCTACTACTG
LOC_Os04g50870
Target Sequence 
TTTTGCTGACAGCTTCTACAGTGAAGATACTCCCCCTGGACTCCGGTTCAAGGATTCTCCTATTGGAACTCTAGCTTCTC
CCCTTGCAGTTGATGTACCAACTCAGCTCCTCCTCCTGGAGCTGAAACCCCTCTCCTCTTGAAGCTCAGATTCTTGCTTC
TCCTGGATCTCAAGCATCTCCTACTCATCTACTTTGATTTGTCTATATGATTTCCTGGCCATGGTCGCTATGGTTGCTCT
GATTGTTTTGTACTAAACTAATGAACTACAACAGCAACTATCTCTCTCTCTCTCTGAGTCACCCTAGTCTCCTCTGCTGC
TCACTCTAGGCTGCTACGGCTGTGGTGTTGCATGACTGAGGTGTTTACTATTGATATGCTACCTATGATTATTTCTCTGT
CTTCAGCTGAGTCTCTAGCCGAATTGCTGGCTACTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis