Browse Element(s) Details


OsAffx.14360.1.S1_at

Description tigr:9632.m04910
TID=OsAffx.14360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoribulokinase (EC 2.7.1.19) - garden pea (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5088011/11Phosphoribulokinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50870Os.780.1.S1_a_at11/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.53256.1.S1_at10/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.7070.1.S1_at8/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50880OsAffx.14360.1.S1_at11/114+29886700..29889804Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os04g50890Os.8400.1.S1_at11/114+29890895..29894578secretory carrier membrane protein, putative, expressed
LOC_Os04g50900OsAffx.26555.1.S1_at11/114+29896282..29896741hypothetical protein
LOC_Os04g50910OsAffx.28971.2.S1_x_at11/114+29900089..29900652hypothetical protein
LOC_Os04g50920Os.49750.1.S1_at7/114+29913406..29917192WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0008974molecular_functionphosphoribulokinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14360.1.S1_at--1121--9951Chr04:29888587..29888611 (25 bp)
TACCCTGGCATCAAATTCTCGTACT
LOC_Os04g50880
OsAffx.14360.1.S1_at--215--371Chr04:29888578..29888602 (25 bp)
ATCAAATTCTCGTACTTCCCGGACA
LOC_Os04g50880
OsAffx.14360.1.S1_at--995--8131Chr04:29888559..29888582 (24 bp)
GGACACCTACTTCGGCCACGAGGTT
LOC_Os04g50880
OsAffx.14360.1.S1_at--868--2031Chr04:29888469..29888574 (25 bp)
ACTTCGGCCACGAGGTTTCGGTGCT
LOC_Os04g50880
OsAffx.14360.1.S1_at--558--1311Chr04:29888442..29888466 (25 bp)
AGATGGACGGGAAGTTCGACAAGCT
LOC_Os04g50880
OsAffx.14360.1.S1_at--156--1631Chr04:29888421..29888445 (25 bp)
AGCTGGACGAGCTGATCTACGTGGA
LOC_Os04g50880
OsAffx.14360.1.S1_at--734--9531Chr04:29888406..29888430 (25 bp)
TCTACGTGGAGAGTCACCTCAGCAA
LOC_Os04g50880
OsAffx.14360.1.S1_at--791--9651Chr04:29888388..29888412 (25 bp)
TCAGCAACCTGTCGACCAAGTACTA
LOC_Os04g50880
OsAffx.14360.1.S1_at--9--4391Chr04:29888373..29888397 (25 bp)
CCAAGTACTACGGAGAGGTGACGCA
LOC_Os04g50880
OsAffx.14360.1.S1_at--1106--1511Chr04:29888349..29888373 (25 bp)
AGCAGATGCTGAAGCACGCCGACTT
LOC_Os04g50880
OsAffx.14360.1.S1_at--525--5691Chr04:29888329..29888353 (25 bp)
GACTTCCCCGGGAGCAACAACGGCA
LOC_Os04g50880
Target Sequence 
TACCCTGGCATCAAATTCTCGTACTTCCCGGACACCTACTTCGGCCACGAGGTTTCGGTGCTGGAGATGGACGGGAAGTT
CGACAAGCTGGACGAGCTGATCTACGTGGAGAGTCACCTCAGCAACCTGTCGACCAAGTACTACGGAGAGGTGACGCAGC
AGATGCTGAAGCACGCCGACTTCCCCGGGAGCAACAACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis