Browse Element(s) Details


OsAffx.14359.1.S1_at

Description tigr:9632.m04903
TID=OsAffx.14359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=conserved hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5081011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g50860Os.21073.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50860Os.52685.1.S1_at11/114+29858539..29861314expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14359.1.S1_at--427--10271Chr04:29839945..29839969 (25 bp)
TTTGATGATCTCCATGTAGCTCCTG
LOC_Os04g50810
OsAffx.14359.1.S1_at--703--3471Chr04:29839907..29839931 (25 bp)
CATGTTTCCCTTGCTTGGTAAGTTT
LOC_Os04g50810
OsAffx.14359.1.S1_at--887--1011Chr04:29839851..29839875 (25 bp)
AGGTTCTTGAGCTTAATTCGCACAA
LOC_Os04g50810
OsAffx.14359.1.S1_at--425--2791Chr04:29839522..29839729 (25 bp)
AAGAGGGCACTGGTCGGCTATGATT
LOC_Os04g50810
OsAffx.14359.1.S1_at--295--6551Chr04:29839501..29839525 (25 bp)
GATTTTGTGGATCTTGTCTTCGGCC
LOC_Os04g50810
OsAffx.14359.1.S1_at--284--10111Chr04:29839441..29839465 (25 bp)
TATGGACAGGTGACCTCCGGTGGAA
LOC_Os04g50810
OsAffx.14359.1.S1_at--335--9991Chr04:29839323..29839347 (25 bp)
TAGCACCCTTCTTTGGTTGCGGTAG
LOC_Os04g50810
OsAffx.14359.1.S1_at--902--2311Chr04:29839050..29839118 (25 bp)
AAAGTTGTTCGCTCCGAGTAATCCG
LOC_Os04g50810
OsAffx.14359.1.S1_at--871--7051Chr04:29839033..29839057 (25 bp)
GTAATCCGTGCAGCCAAGATTCCGA
LOC_Os04g50810
OsAffx.14359.1.S1_at--894--9231Chr04:29838881..29838905 (25 bp)
TCCATTTGCTGCTACAGGTTCTGAA
LOC_Os04g50810
OsAffx.14359.1.S1_at--388--6131Chr04:29838850..29838874 (25 bp)
GAGGGCTGCATTGGTGACTCGCAAC
LOC_Os04g50810
Target Sequence 
TTTGATGATCTCCATGTAGCTCCTGCTTCTACAAGTACCATGTTTCCCTTGCTTGGTAAGTTTGGGCTACTTGAGCAACG
CAATATCGAGGAAAAGGTTCTTGAGCTTAATTCGCACAAGATAATTAACTTACTCAAGAGGGCACTGGTCGGCTATGATT
TTGTGGATCTTGTCTTCGGCCTCCTTAGCCTTCCACTTGGATCCACAATCAAGGCTTATGGACAGGTGACCTCCGGTGGA
AGTAGTGGTCTTGATAACCTCTACAGAAGTATAAATGGAAGCGGAATAGGATGCGTAAAACAAGAATGCCAAAGCCTGCT
ACTGTCCCCAATGCTAGCACCCTTCTTTGGTTGCGGTAGCAGTGTTCTGCTACAAGTTCAAGAATCACCTATAAAAAGTT
GTTCGCTCCGAGTAATCCGTGCAGCCAAGATTCCGAACGAGATGCTTGTGAAGAAAGAGCTCACCCTCGACAGAACCCAG
GTTTTCCATTTGCTGCTACAGGTTCTGAAGCTACTGAGGGCTGCATTGGTGACTCGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis