Browse Element(s) Details


Os.10591.1.S1_at

Description gb:AK067019.1
DB_XREF= gi:32977037
TID=Os.10591.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089A03, full insert sequence.
FL= gb:AK067019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5079010/11Aldose reductase-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50760Os.51663.1.S1_at10/114+29803678..29807080IBR domain containing protein, expressed
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10591.1.S1_at--343--6951Chr04:29828289..29828313 (25 bp)
GTAGAGCTTGAGTCTGCAGAACCTA
LOC_Os04g50790
Os.10591.1.S1_at--56--6111Chr04:29828280..29828304 (25 bp)
GAGTCTGCAGAACCTAACAGCTCAG
LOC_Os04g50790
Os.10591.1.S1_at--276--2491Chr04:29828265..29828289 (25 bp)
AACAGCTCAGAAGGCCATGGAACAC
LOC_Os04g50790
Os.10591.1.S1_at--139--9011Chr04:29828224..29828248 (25 bp)
TGAATTCGCCAAGATACAGGTCTCT
LOC_Os04g50790
Os.10591.1.S1_at--334--5351Chr04:29828190..29828214 (25 bp)
GAAGATATTCCCATCTCTACGACTG
LOC_Os04g50790
Os.10591.1.S1_at--997--8871Chr04:29828146..29828170 (25 bp)
TGAGGATTCCAGTCAGGCGTCTCCA
LOC_Os04g50790
Os.10591.1.S1_at--868--7671Chr04:29828085..29828109 (25 bp)
GGGTTGATACTATGATTCCATTGAT
LOC_Os04g50790
Os.10591.1.S1_at--943--5631Chr04:29828045..29828069 (25 bp)
GACACGAAATGGTCGCTGAATTCAG
LOC_Os04g50790
Os.10591.1.S1_at--1021--4731Chr04:29828020..29828044 (25 bp)
GCTGTAGTGTTGTTGTGATCCTTCA
LOC_Os04g50790
Os.10591.1.S1_at--905--8251Chr04:29827886..29827910 (25 bp)
GGCACCAACCATTGATATACCATTT
LOC_Os04g50790
Os.10591.1.S1_at--776--9351NONE
TCGACATTAGTATTCCCTTTGAGGT
NONE
Target Sequence 
GTAGAGCTTGAGTCTGCAGAACCTAACAGCTCAGAAGGCCATGGAACACAAAAGGATGTGGATGGTGAATTCGCCAAGAT
ACAGGTCTCTGAATCCCCTGAAGATATTCCCATCTCTACGACTGCAACCGTCCCCATTACTGATGAGGATTCCAGTCAGG
CGTCTCCACCTGCCGCCTCTCCCAAAAAGCCAGAACCTGCGCAGGGGTTGATACTATGATTCCATTGATACATGAGTGTA
AATAGACACGAAATGGTCGCTGAATTCAGGCTGTAGTGTTGTTGTGATCCTTCAAACTAAACCTCTTTGAAGTTTGGATT
TGGGACCTGGAATAGGTTGCAGTTTGTAGCATCTATTTTTCTCAATTGAACATCATTTTCTTGCATTAGCGACCTTCTTA
ATAGGCACCAACCATTGATATACCATTTTGACATGGGATATTGATGTGGATTTGGTGGAATATATGAGAAATTATGTTTG
AGTACTTCACTGNAACTCGACATTAGTATTCCCTTTGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis