Browse Element(s) Details


OsAffx.14358.1.S1_at

Description tigr:9632.m04900
TID=OsAffx.14358.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5078011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50740Os.54242.1.S1_at11/114+29797832..29801986Zinc finger found in FPG and IleRS family protein, expressed
LOC_Os04g50750OsAffx.4140.1.S1_at11/114+29802084..29802621hypothetical protein
LOC_Os04g50760Os.51663.1.S1_at10/114+29803678..29807080IBR domain containing protein, expressed
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14358.1.S1_at--823--8371Chr04:29825808..29825832 (25 bp)
GGCGAAGGAGCGGTCCGTTCACCTC
LOC_Os04g50780
OsAffx.14358.1.S1_at--307--4111Chr04:29825810..29825834 (25 bp)
CGAAGGAGCGGTCCGTTCACCTCAT
LOC_Os04g50780
OsAffx.14358.1.S1_at--47--2931Chr04:29825812..29825836 (25 bp)
AAGGAGCGGTCCGTTCACCTCATAC
LOC_Os04g50780
OsAffx.14358.1.S1_at--1126--7991Chr04:29825814..29825838 (25 bp)
GGAGCGGTCCGTTCACCTCATACCG
LOC_Os04g50780
OsAffx.14358.1.S1_at--236--10671Chr04:29825869..29825893 (25 bp)
TTCCTCTTCTCTCATGACCCTTCTG
LOC_Os04g50780
OsAffx.14358.1.S1_at--721--4311Chr04:29825887..29826082 (25 bp)
CCTTCTGCTTCCGAAATGTCCAGTT
LOC_Os04g50780
OsAffx.14358.1.S1_at--355--3651Chr04:29825888..29826083 (25 bp)
CTTCTGCTTCCGAAATGTCCAGTTT
LOC_Os04g50780
OsAffx.14358.1.S1_at--241--10591Chr04:29825889..29826084 (25 bp)
TTCTGCTTCCGAAATGTCCAGTTTT
LOC_Os04g50780
OsAffx.14358.1.S1_at--9--9491Chr04:29825890..29826085 (25 bp)
TCTGCTTCCGAAATGTCCAGTTTTG
LOC_Os04g50780
OsAffx.14358.1.S1_at--363--3651Chr04:29825891..29826086 (25 bp)
CTGCTTCCGAAATGTCCAGTTTTGG
LOC_Os04g50780
OsAffx.14358.1.S1_at--1062--4891Chr04:29825893..29826088 (25 bp)
GCTTCCGAAATGTCCAGTTTTGGAG
LOC_Os04g50780
Target Sequence 
GGCGAAGGAGCGGTCCGTTCACCTCATACCGCTGCTCACCGCCCTCTGCTTCGTCATCCTCTTCCTCTTCTCTCATGACC
CTTCTGCTTCCGAAATGTCCAGTTTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis