Browse Element(s) Details


Os.54242.1.S1_at

Description gb:AK102739.1
DB_XREF= gi:32987948
TID=Os.54242.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106E03, full insert sequence.
FL= gb:AK102739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5074011/11Zinc finger found in FPG and IleRS family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed
LOC_Os04g50740Os.54242.1.S1_at11/114+29797832..29801986Zinc finger found in FPG and IleRS family protein, expressed
LOC_Os04g50750OsAffx.4140.1.S1_at11/114+29802084..29802621hypothetical protein
LOC_Os04g50760Os.51663.1.S1_at10/114+29803678..29807080IBR domain containing protein, expressed
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54242.1.S1_at--908--4431Chr04:29801131..29801258 (25 bp)
GCCATTCAAGTGAGCCCTGCAGATA
LOC_Os04g50740
Os.54242.1.S1_at--857--5371Chr04:29801277..29801301 (25 bp)
GAAGAAGAATCCAACCGTCCTCATT
LOC_Os04g50740
Os.54242.1.S1_at--560--3151Chr04:29801356..29801379 (24 bp)
AATTGTCGCCAACCAAATCCTAAGA
LOC_Os04g50740
Os.54242.1.S1_at--574--3271Chr04:29801565..29801589 (25 bp)
CAACAGCCATATGTTCTGCTGGGCA
LOC_Os04g50740
Os.54242.1.S1_at--137--4131Chr04:29801609..29801633 (25 bp)
CGCAGTGCCACAGGATGGTTCGGAA
LOC_Os04g50740
Os.54242.1.S1_at--1116--1511Chr04:29801666..29801690 (25 bp)
AGCAGCACAGTGTCGACCCTGAGAT
LOC_Os04g50740
Os.54242.1.S1_at--39--671Chr04:29801720..29801744 (25 bp)
ATGACTCTGGTTCGTAACACTTCTG
LOC_Os04g50740
Os.54242.1.S1_at--582--10871Chr04:29801755..29801779 (25 bp)
TTGGCAGAGAGCATCGGTTTCGACT
LOC_Os04g50740
Os.54242.1.S1_at--130--491Chr04:29801767..29801791 (25 bp)
ATCGGTTTCGACTGTGGCGTATTTC
LOC_Os04g50740
Os.54242.1.S1_at--973--6871Chr04:29801785..29801809 (25 bp)
GTATTTCCTTCTAGAGCCGTTGCAT
LOC_Os04g50740
Os.54242.1.S1_at--4--6471Chr04:29801917..29801941 (25 bp)
GATAATCAGTTCGTGCAAAGCTTGC
LOC_Os04g50740
Target Sequence 
GCCATTCAAGTGAGCCCTGCAGATACCAGGAGAATCTGGCAACGAAGAAGAATCCAACCGTCCTCATTGAGGAGGTGAAG
AAAGAACTGGAGGGGGGACTGTCAAGACAGCATCCGTGCCCAAATTGTCGCCAACCAAATCCTAAGATGGGAAACAACAG
CCATATGTTCTGCTGGGCATGCCAGGTTCATTACTGTGCGCAGTGCCACAGGATGGTTCGGAAGAGCTCCGAGCATTATG
GTCCCCGTGGATGCAAGCAGCACAGTGTCGACCCTGAGATCCCCCTCAGATTCAAGGCAAACAAAAACGATGACTCTGGT
TCGTAACACTTCTGTGATGATCTGTTGGCAGAGAGCATCGGTTTCGACTGTGGCGTATTTCCTTCTAGAGCCGTTGCATC
ATTACGGTACATGTTATTACATGCGGTTAATATTATCCTATGCAGTTTCAAGGAGCAACTTTGCACACATATTTTTGTTG
TGGAAGATTAGTAAACTGACGTAGAGGATAATCAGTTCGTGCAAAGCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis