Browse Element(s) Details


Os.20398.1.S1_at

Description gb:AK069584.1
DB_XREF= gi:32979608
TID=Os.20398.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020B01, full insert sequence.
FL= gb:AK069584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5073011/11RWD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed
LOC_Os04g50740Os.54242.1.S1_at11/114+29797832..29801986Zinc finger found in FPG and IleRS family protein, expressed
LOC_Os04g50750OsAffx.4140.1.S1_at11/114+29802084..29802621hypothetical protein
LOC_Os04g50760Os.51663.1.S1_at10/114+29803678..29807080IBR domain containing protein, expressed
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20398.1.S1_at--30--1411Chr04:29796567..29796591 (25 bp)
AGACAGCATCCGTGCTCGACTTGTC
LOC_Os04g50730
Os.20398.1.S1_at--693--5671Chr04:29796584..29796608 (25 bp)
GACTTGTCGCCAACTAAATCCCAAG
LOC_Os04g50730
Os.20398.1.S1_at--147--151Chr04:29796853..29796877 (25 bp)
ATTACTGTGCGCTGTGCCGCATGGT
LOC_Os04g50730
Os.20398.1.S1_at--1047--6371Chr04:29796941..29796965 (25 bp)
GATCCCTCCGGCTCGAGATAAGCAA
LOC_Os04g50730
Os.20398.1.S1_at--838--6611Chr04:29797010..29797034 (25 bp)
GTTGGCGGAGCATTGATCGGTTTCA
LOC_Os04g50730
Os.20398.1.S1_at--790--6391Chr04:29797024..29797048 (25 bp)
GATCGGTTTCAGCTATGGTTTACTT
LOC_Os04g50730
Os.20398.1.S1_at--342--8571Chr04:29797039..29797063 (25 bp)
TGGTTTACTTCTTTCATCCGGACAA
LOC_Os04g50730
Os.20398.1.S1_at--927--811Chr04:29797067..29797091 (25 bp)
ATGGTCTGTCATGAATTGTTTTGTC
LOC_Os04g50730
Os.20398.1.S1_at--855--2631Chr04:29797109..29797133 (25 bp)
AACCTCAAACGACATGTTCTCTCTA
LOC_Os04g50730
Os.20398.1.S1_at--379--9731Chr04:29797176..29797200 (25 bp)
TCAAGTGTGCGAGTGTACCTGTAAC
LOC_Os04g50730
Os.20398.1.S1_at--313--10491Chr04:29797251..29797275 (25 bp)
TTACAGTTTGTGTCATCTTCTATTA
LOC_Os04g50730
Target Sequence 
AGACAGCATCCGTGCTCGACTTGTCGCCAACTAAATCCCAAGATGGGAAATAACAACCATATCTTCTGCTGGGCATGCCA
AGTTCATTACTGTGCGCTGTGCCGCATGGTGGTGCGGAAGAGCTCGGAGCATTATGGTCCCCGTGGATGCAAGCNGCACA
GTGTCGACCCCTAGATCCCTCCGGCTCGAGATAAGCAAAAATGTGACTNTCGTTCAGAACACATAGACTTGAGAGGTGAT
CCGTTGGCGGAGCATTGATCGGTTTCAGCTATGGTTTACTTCTTTCATCCGGACAATGTATGGTCTGTCATGAATTGTTT
TGTCAAAGCAACCGAACTNTCAACCTCAAACGACATGTTCTCTCTATAATAATGTNTTCCATTGAAATGATTTCGTTTGT
TTGATGTGTCAAGTGTGCGAGTGTACCTGTAACATAGTTGTAGCAGCAGGATATAGGGGGAAAAAGGTGAGTGAATTACA
TATTTACAGTTTGTGTCATCTTCTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis