Browse Element(s) Details


OsAffx.16750.1.S1_at

Description tigr:9635.m04784
TID=OsAffx.16750.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4746011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed
LOC_Os07g47460OsAffx.16750.1.S1_at11/117+28370141..28371194expressed protein
LOC_Os07g47470OsAffx.16751.1.S1_at11/117+28371675..28373330Rf1 protein, mitochondrial precursor, putative
LOC_Os07g47480Os.7607.1.S1_at11/117+28380891..28382430heavy metal-associated domain containing protein, expressed
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16750.1.S1_at--696--371Chr07:28370427..28370447 (21 bp)
ATCAAGGAGCTGACCTCGTCGCAGG
LOC_Os07g47460
OsAffx.16750.1.S1_at--332--10711Chr07:28370453..28370477 (25 bp)
TTGCTGGACAGGATCCAGAAGCTCA
LOC_Os07g47460
OsAffx.16750.1.S1_at--939--5391Chr07:28370470..28370549 (25 bp)
GAAGCTCAAACTGAATTGGATTATT
LOC_Os07g47460
OsAffx.16750.1.S1_at--735--1471Chr07:28370552..28370576 (25 bp)
AGAATTTCTCTGTCTTGATGGCAAA
LOC_Os07g47460
OsAffx.16750.1.S1_at--763--3411Chr07:28370595..28370619 (25 bp)
CAGAAGTGCTTTTGCAGGAGGTGCA
LOC_Os07g47460
OsAffx.16750.1.S1_at--226--6151Chr07:28370612..28370636 (25 bp)
GAGGTGCAGAACTGGCGCTCCAACC
LOC_Os07g47460
OsAffx.16750.1.S1_at--81--4791Chr07:28370628..28370652 (25 bp)
GCTCCAACCTCGAGACACAGGTCAA
LOC_Os07g47460
OsAffx.16750.1.S1_at--400--5631Chr07:28370641..28370665 (25 bp)
GACACAGGTCAAGACAAGCCAGAAT
LOC_Os07g47460
OsAffx.16750.1.S1_at--780--2651Chr07:28370656..28370892 (25 bp)
AAGCCAGAATGTCGTACTGCTCATG
LOC_Os07g47460
OsAffx.16750.1.S1_at--698--3491Chr07:28370889..28370913 (25 bp)
CATGGTTCTGGCATATGATTCTAGG
LOC_Os07g47460
OsAffx.16750.1.S1_at--582--8151Chr07:28370921..28371111 (25 bp)
GGAAATCAGAGCAACGAAGACACAA
LOC_Os07g47460
Target Sequence 
ATCAAGGAGCTGACCTCGTCGCAGGGGGAGTTGCTGGACAGGATCCAGAAGCTCAAACTGAATTGGATTATTGGAGAATT
TCTCTGTCTTGATGGCAAAATGATGGAGAATGAGCAGCAGAAGTGCTTTTGCAGGAGGTGCAGAACTGGCGCTCCAACCT
CGAGACACAGGTCAAGACAAGCCAGAATGTCGTACTGCTCATGGTTCTGGCATATGATTCTAGGAAATGAAGGAAATCAG
AGCAACGAAGACACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis