Browse Element(s) Details


OsAffx.5660.1.S1_at

Description tigr:9635.m04787
TID=OsAffx.5660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GH3 auxin-responsive promoter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4749011/11Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed
LOC_Os07g47460OsAffx.16750.1.S1_at11/117+28370141..28371194expressed protein
LOC_Os07g47470OsAffx.16751.1.S1_at11/117+28371675..28373330Rf1 protein, mitochondrial precursor, putative
LOC_Os07g47480Os.7607.1.S1_at11/117+28380891..28382430heavy metal-associated domain containing protein, expressed
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5660.1.S1_at--402--6271Chr07:28390941..28390965 (25 bp)
GATGTGCTTCAAGTGACAGGCTTCT
LOC_Os07g47490
OsAffx.5660.1.S1_at--280--1111Chr07:28390930..28390954 (25 bp)
AGTGACAGGCTTCTACAACCGAGCT
LOC_Os07g47490
OsAffx.5660.1.S1_at--254--5891Chr07:28390910..28390934 (25 bp)
GAGCTCCGCAGTTCAAATTCATTTG
LOC_Os07g47490
OsAffx.5660.1.S1_at--938--8051Chr07:28390883..28390907 (25 bp)
GGAGAAATGTTATCCTCAGCATCGA
LOC_Os07g47490
OsAffx.5660.1.S1_at--411--1531Chr07:28390866..28390890 (25 bp)
AGCATCGATTCTGACAAGACCAACG
LOC_Os07g47490
OsAffx.5660.1.S1_at--117--8031Chr07:28390840..28390864 (25 bp)
GGAGGATCTCCACAACAGTGTCACC
LOC_Os07g47490
OsAffx.5660.1.S1_at--243--7451Chr07:28390823..28390847 (25 bp)
GTGTCACCACTGCTAAGAAAATCCT
LOC_Os07g47490
OsAffx.5660.1.S1_at--278--5971Chr07:28390797..28390821 (25 bp)
GAGAACCAAAATTACCTCCTCCTGG
LOC_Os07g47490
OsAffx.5660.1.S1_at--589--3811Chr07:28390779..28390803 (25 bp)
CTCCTGGAGTACACTAGCTACACTG
LOC_Os07g47490
OsAffx.5660.1.S1_at--894--1551Chr07:28390764..28390788 (25 bp)
AGCTACACTGATATTTCCACTGTCC
LOC_Os07g47490
OsAffx.5660.1.S1_at--418--2851Chr07:28390710..28390734 (25 bp)
AAGTCCACCCACGATGAAAGGCCGG
LOC_Os07g47490
Target Sequence 
GATGTGCTTCAAGTGACAGGCTTCTACAACCGAGCTCCGCAGTTCAAATTCATTTGCCGGAGAAATGTTATCCTCAGCAT
CGATTCTGACAAGACCAACGAGGAGGATCTCCACAACAGTGTCACCACTGCTAAGAAAATCCTGGAGAACCAAAATTACC
TCCTCCTGGAGTACACTAGCTACACTGATATTTCCACTGTCCCTGGCCACTACGTGCTGTTCTGGGAGATCAAGTCCACC
CACGATGAAAGGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis