Browse Element(s) Details


Os.10778.1.S1_at

Description gb:AK065980.1
DB_XREF= gi:32975998
TID=Os.10778.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049G01, full insert sequence.
FL= gb:AK065980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4750011/11Histone-arginine methyltransferase CARM1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47480Os.7607.1.S1_at11/117+28380891..28382430heavy metal-associated domain containing protein, expressed
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
GO:0016274molecular_functionprotein-arginine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10778.1.S1_at--430--5511Chr07:28406386..28406410 (25 bp)
GAACAAGGTGGCATCCTGCAGACAT
LOC_Os07g47500
Os.10778.1.S1_at--715--8091Chr07:28406433..28406457 (25 bp)
GGAGCCATACTACAGGCTGTCTCAA
LOC_Os07g47500
Os.10778.1.S1_at--702--1211Chr07:28406498..28406520 (23 bp)
AGTTACCATCTTTGCAGCCACAGAG
LOC_Os07g47500
Os.10778.1.S1_at--447--9491Chr07:28407201..28407225 (25 bp)
TCTCTGGGACTATCACTACGGACAA
LOC_Os07g47500
Os.10778.1.S1_at--1003--1251Chr07:28407225..28407249 (25 bp)
AGATTAGTTGTCTGGCCTCAGCTAT
LOC_Os07g47500
Os.10778.1.S1_at--622--5171Chr07:28407500..28407524 (25 bp)
GCAAGATGGTCTTAGCCCTAGTATA
LOC_Os07g47500
Os.10778.1.S1_at--173--4711Chr07:28407549..28407573 (25 bp)
GCGGCCTTCACTAGATAGCTCGTAA
LOC_Os07g47500
Os.10778.1.S1_at--49--10731Chr07:28407581..28407605 (25 bp)
TTGCTTCAGGCAAACAACTCCAGGC
LOC_Os07g47500
Os.10778.1.S1_at--675--1191Chr07:28407615..28407639 (25 bp)
AGTATGCTCCTACCTGATGTTGCTA
LOC_Os07g47500
Os.10778.1.S1_at--720--7511Chr07:28407654..28407678 (25 bp)
GTGGCTAACATTGCATTCGTTGTGT
LOC_Os07g47500
Os.10778.1.S1_at--320--4811Chr07:28407709..28407733 (25 bp)
GCTCGTGTCTGCACCGTTATTTAAA
LOC_Os07g47500
Target Sequence 
GAACAAGGTGGCATCCTGCAGACATCCACAGCCAAACTTGAACTCAAGGAGCCATACTACAGGCTGTCTCAACCACAACC
ATATGTGATGCAACAAGACCAGCAGCAGCAGCAGTTACCATCTTTGCAGCCACAGAGTCCTCTCTGGGACTATCACTACG
GACAAGATTAGTTGTCTGGCCTCAGCTATTGAACATTGGCAAGAATAGCAGNNGGATCTGAGCAGCAGATGCAAGATGGT
CTTAGCCCTAGTATAACGATTGAACCAGACCAAGACTCGGCGGCCTTCACTAGATAGCTCGTAAGCCGGAGTTGCTTCAG
GCAAACAACTCCAGGCCTGTACAACAGTATGCTCCTACCTGATGTTGCTAGGCGTTAGCTGTCANGTGGCTAACATTGCA
TTCGTTGTGTACGAGAGGTTGTGCAGCTGTAGCTAATTGTGCTCGTGTCTGCACCGTTATTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis