Browse Element(s) Details


Os.13897.1.S1_at

Description gb:AK119940.1
DB_XREF= gi:37989563
TID=Os.13897.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-B06, full insert sequence.
FL= gb:AK119940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4753010/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein
LOC_Os07g47550NANA7+28438338..28439762UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13897.1.S1_at--161--9531Chr07:28422702..28422726 (25 bp)
TCTCAATCTTCCGAGGTTCGGTGAT
LOC_Os07g47530
Os.13897.1.S1_at--198--6711Chr07:28422717..28422741 (25 bp)
GTTCGGTGATCAACTTCCAATCGGT
LOC_Os07g47530
Os.13897.1.S1_at--522--5591Chr07:28422758..28422782 (25 bp)
GAAATTTCCTATTGTGTTCACTAAG
LOC_Os07g47530
Os.13897.1.S1_at--44--3211NONE
CAGAGTAATTTTTTGCTTCGAAGGT
NONE
Os.13897.1.S1_at--601--4271Chr07:28422873..28422897 (25 bp)
CCTGGATTTGTGTTGTGGTCTTTAA
LOC_Os07g47530
Os.13897.1.S1_at--418--8651Chr07:28422886..28422910 (25 bp)
TGTGGTCTTTAAGGACTAAGGACTA
LOC_Os07g47530
Os.13897.1.S1_at--991--951Chr07:28422904..28422928 (25 bp)
AGGACTAAATCACGCATTCTGCAGA
LOC_Os07g47530
Os.13897.1.S1_at--914--2351Chr07:28422941..28422965 (25 bp)
AAACCCCTCAATTCCGAGTGGCATA
LOC_Os07g47530
Os.13897.1.S1_at--148--6131Chr07:28422956..28422980 (25 bp)
GAGTGGCATAACTTCTGTCCTTAGT
LOC_Os07g47530
Os.13897.1.S1_at--1134--3831Chr07:28422970..28422994 (25 bp)
CTGTCCTTAGTTCTTAGTGGTATAC
LOC_Os07g47530
Os.13897.1.S1_at--495--231Chr07:28423002..28423026 (25 bp)
ATATTTTATCTGATCTTGGACCAAG
LOC_Os07g47530
Target Sequence 
TCTCAATCTTCCGAGGTTCGGTGATCAACTTCCAATCGGTTGAAACAATATGTTCTGAAATTTCCTATTGTGTTCACTAA
GATCATTCCATTGATAGACAATGAGGTGCTACAGTAATAGCAGATTTCAGGAAACAGAGTAATTTTTTGCTTCGAAGGTT
TTTTTGTAGAACCTGGATTTGTGTTGTGGTCTTTAAGGACTAAGGACTAAATCACGCATTCTGCAGAAAAAAGAAGTACA
AACCCCTCAATTCCGAGTGGCATAACTTCTGTCCTTAGTTCTTAGTGGTATACATTTTGTATATTTTATCTGATCTTGGA
CCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis