Browse Element(s) Details


Os.10094.1.S1_at

Description gb:AK103678.1
DB_XREF= gi:32988887
TID=Os.10094.1
CNT=42
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136C23, full insert sequence.
FL= gb:AK103678.1 gb:AK060100.1 gb:AK104794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4758011/11TGF beta-inducible nuclear protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein
LOC_Os07g47550NANA7+28438338..28439762UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10094.1.S1_at--426--7011Chr07:28447760..28447784 (25 bp)
GTACTCTACTCTTGGTGTTTTGACA
LOC_Os07g47580
Os.10094.1.S1_at--1160--1051Chr07:28447427..28447451 (25 bp)
AGTGAACTTGGTCTGGTAACCCCTG
LOC_Os07g47580
Os.10094.1.S1_at--787--6891Chr07:28447255..28447279 (25 bp)
GTATCAATGCTGTCTTACTCGTGTA
LOC_Os07g47580
Os.10094.1.S1_at--532--8111Chr07:28447229..28447253 (25 bp)
GGACGCAATGCTATACACTTCATTC
LOC_Os07g47580
Os.10094.1.S1_at--564--1251Chr07:28447182..28447206 (25 bp)
AGATGTACCCGTTCAGTGGGTCTTT
LOC_Os07g47580
Os.10094.1.S1_at--197--5831Chr07:28447155..28447179 (25 bp)
GACCGATCATTCAGAGTAGCGTGTT
LOC_Os07g47580
Os.10094.1.S1_at--444--2571Chr07:28447127..28447151 (25 bp)
AACTGTGGGCACAAGGCTCATCTGT
LOC_Os07g47580
Os.10094.1.S1_at--898--8311Chr07:28447113..28447137 (25 bp)
GGCTCATCTGTTATATGCCTTTAAC
LOC_Os07g47580
Os.10094.1.S1_at--613--2851Chr07:28447003..28447027 (25 bp)
AAGTCTGGTCTCATTTGCTTCTAGA
LOC_Os07g47580
Os.10094.1.S1_at--421--4911Chr07:28446987..28447011 (25 bp)
GCTTCTAGACTTCTGCATGTATGTA
LOC_Os07g47580
Os.10094.1.S1_at--312--2131Chr07:28446959..28446983 (25 bp)
ACAGTGTATCTGCTAGTACTTCCCC
LOC_Os07g47580
Target Sequence 
GTACTCTACTCTTGGTGTTTTGACAAGGGGAACTATCATTGAGGTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTG
GAAAAGTTGTTTGGGGTAAATATGCACAAGTTACAAACAACCCAGAGAATGATGGCTGTATCAATGCTGTCTTACTCGTG
TAAGGACGCAATGCTATACACTTCATTCTTCTCGTTGCGACTCTCACCCCAGATGTACCCGTTCAGTGGGTCTTTTTGAC
CGATCATTCAGAGTAGCGTGTTTTAAACTGTGGGCACAAGGCTCATCTGTTATATGCCTTTAACATATCTGGAATACATT
TTACATTGTATGTCGTGGTGCAGAAAAGATCTTTACTAGTTACATTTTACAACCTGTTATGAGAGCTACAAGTCTGGTCT
CATTTGCTTCTAGACTTCTGCATGTATGTACTAACAGTGTATCTGCTAGTACTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis