Browse Element(s) Details


Os.7106.1.S1_a_at

Description gb:AK072839.1
DB_XREF= gi:32982862
TID=Os.7106.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141I23, full insert sequence.
FL= gb:AK072839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4763011/11Pre-mRNA splicing factor SF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein
LOC_Os07g47700Os.7085.2.S1_x_at11/117+28493024..28496411NAD-dependent epimerase/dehydratase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0006376biological_processmRNA splice site selection
GO:0048024biological_processregulation of nuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005681cellular_componentspliceosome complex
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7106.1.S1_a_at--811--1271Chr07:28468676..28468699 (24 bp)
AGATCTCAGTCTCCAAATACTTCTC
LOC_Os07g47630
Os.7106.1.S1_a_at--340--8171Chr07:28468363..28468387 (25 bp)
GGAATCATGGTCCTGAAACGTTTTG
LOC_Os07g47630
Os.7106.1.S1_a_at--802--5531Chr07:28468349..28468373 (25 bp)
GAAACGTTTTGACATCTGTCGCCCT
LOC_Os07g47630
Os.7106.1.S1_a_at--121--5711Chr07:28468323..28468347 (25 bp)
GACTACTTCTGAATCGCTTCCAAAG
LOC_Os07g47630
Os.7106.1.S1_a_at--141--3571Chr07:28468290..28468314 (25 bp)
CATACGTTCAGTGCTCTTTCAGATT
LOC_Os07g47630
Os.7106.1.S1_a_at--358--9931Chr07:28468266..28468290 (25 bp)
TACTGGATGATACTGTACGCCTATT
LOC_Os07g47630
Os.7106.1.S1_a_at--423--7151Chr07:28468219..28468243 (25 bp)
GTCTTTTGTTCATTTTGACACTGTA
LOC_Os07g47630
Os.7106.1.S1_a_at--634--5631Chr07:28468203..28468227 (25 bp)
GACACTGTACTTGACTTAGGTATAT
LOC_Os07g47630
Os.7106.1.S1_a_at--1119--1231Chr07:28468158..28468182 (25 bp)
AGTTGAACAGAGTCATTCCGTCGTT
LOC_Os07g47630
Os.7106.1.S1_a_at--593--12Chr07:9531034..9531164 (24 bp)
ATTCCGTCGTTTGTTTGCTTAATGC
NONE
Os.7106.1.S1_a_at--532--9071Chr07:28468129..28468153 (25 bp)
TGCTTAATGCACTTCCTAGCTCAAG
LOC_Os07g47630
Target Sequence 
AGATCTCAGTCTCCAAATACTTCTCCTGCCAATGGTGATGCAGCAAGCCCNCAAGAAANNCGCAGCCCAAGCANGGANGC
CCNCCCNCAAGNAAANCGTAGCCCAAGCAGGAGCCCATCACGTTCCCGATCTCNCTGATGCCAAGTCCGAANTGATGCTG
ATGTGCTTCTGGGGACGGAGTGTCGAGGAATCATGGTCCTGAAACGTTTTGACATCTGTCGCCCTCGACTACTTCTGAAT
CGCTTCCAAAGTACTATTTCATACGTTCAGTGCTCTTTCAGATTACTGGATGATACTGTACGCCTATTTATAGATTTGAA
CTTGGGATTTGTCTTTTGTTCATTTTGACACTGTACTTGACTTAGGTATATTATTGTGGTACTGGTAAGAAAGTTGAACA
GAGTCATTCCGTCGTTTGTTTGCTTAATGCACTTCCTAGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7106.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis