Browse Element(s) Details


Os.26799.1.A1_at

Description gb:AK065454.1
DB_XREF= gi:32975472
TID=Os.26799.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024P14, full insert sequence.
FL= gb:AK065454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4759011/11heavy metal-induced putative protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein
LOC_Os07g47550NANA7+28438338..28439762UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26799.1.A1_at--847--311Chr07:28451863..28451887 (25 bp)
ATACCGTGTTTGATCCAGTTGCTCT
LOC_Os07g47590
Os.26799.1.A1_at--980--6671Chr07:28451846..28451870 (25 bp)
GTTGCTCTTTCCTGTGGTCACATAT
LOC_Os07g47590
Os.26799.1.A1_at--844--8651Chr07:28451775..28451799 (25 bp)
TGGGCTGAAGTCTGCCGAGCGCAAA
LOC_Os07g47590
Os.26799.1.A1_at--432--7271Chr07:28451628..28451760 (25 bp)
GTGCCGACAGGCAGGAGTCTTTCCT
LOC_Os07g47590
Os.26799.1.A1_at--900--6091Chr07:28451614..28451638 (25 bp)
GAGTCTTTCCTAATGCTGTACACTT
LOC_Os07g47590
Os.26799.1.A1_at--360--8971Chr07:28451353..28451377 (25 bp)
TGAACGTGTTCGTCTGGCTAAGGAA
LOC_Os07g47590
Os.26799.1.A1_at--637--7651Chr07:28451324..28451348 (25 bp)
GGGAGTCACAGTGCAGGGCATTCTT
LOC_Os07g47590
Os.26799.1.A1_at--369--3471Chr07:28451311..28451335 (25 bp)
CAGGGCATTCTTGGGCATGTGATTC
LOC_Os07g47590
Os.26799.1.A1_at--698--8211Chr07:28451219..28451243 (25 bp)
GGAATTTGCCATTTGTTGTCACTTA
LOC_Os07g47590
Os.26799.1.A1_at--828--10811Chr07:28451204..28451228 (25 bp)
TTGTCACTTATATCCTGCTCTGTTG
LOC_Os07g47590
Os.26799.1.A1_at--768--9471Chr07:28451186..28451210 (25 bp)
TCTGTTGCTCCTCTTTGTGTAAGAA
LOC_Os07g47590
Target Sequence 
ATACCGTGTTTGATCCAGTTGCTCTTTCCTGTGGTCACATATATTGCTACTTGTGCAGCTGTTCTGCTGCATCCGTTACG
ATCGTTGATGGGCTGAAGTCTGCCGAGCGCAAATCAAAGTGCCCACTGTGCCGACAGGCAGGAGTCTTTCCTAATGCTGT
ACACTTGGATGAGCTGAACATGCTACTAAGCTATAGTTGTCCAGAGTACTGGGAGAAGAGAATACAGATGGAGCGGGTTG
AACGTGTTCGTCTGGCTAAGGAACACTGGGAGTCACAGTGCAGGGCATTCTTGGGCATGTGATTCTAAAGTTGGTGGATT
TTTTTTTTCTTTAGAGGGGCTTCATATGTGATGTATAGTTTCTTGACAAAATGGAATTTGCCATTTGTTGTCACTTATAT
CCTGCTCTGTTGCTCCTCTTTGTGTAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26799.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis