Browse Element(s) Details


Os.53309.1.S1_at

Description gb:AK071934.1
DB_XREF= gi:32981957
TID=Os.53309.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082K04, full insert sequence.
FL= gb:AK071934.1 gb:AK107556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4765011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein
LOC_Os07g47700Os.7085.2.S1_x_at11/117+28493024..28496411NAD-dependent epimerase/dehydratase family protein, putative, expressed
LOC_Os07g47710Os.48988.1.S1_at8/117+28499227..2850069860S ribosomal protein L22-2, putative, expressed
LOC_Os07g47720Os.56867.1.S1_at11/117+28501369..28503801pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53309.1.S1_at--755--11Chr07:28476117..28476141 (25 bp)
ATTGTGGTAGGCTGGTAGCACCTCC
LOC_Os07g47650
Os.53309.1.S1_at--487--2291Chr07:28476149..28476171 (23 bp)
AAATGAGGATGCTTCACTACTGGGC
LOC_Os07g47650
Os.53309.1.S1_at--584--10811Chr07:28477548..28477572 (25 bp)
TTGTGTTTCAATTCCTTATCGTCTG
LOC_Os07g47650
Os.53309.1.S1_at--697--911Chr07:28477585..28477609 (25 bp)
AGGCATTTGGAATTCTACCCAGCAA
LOC_Os07g47650
Os.53309.1.S1_at--959--9611Chr07:28477613..28477637 (25 bp)
TCATGCATTTGGATCTCTCTTAGAC
LOC_Os07g47650
Os.53309.1.S1_at--91--191Chr07:28477680..28477704 (25 bp)
ATTTATTCTTCATTGCCGGTCAGTT
LOC_Os07g47650
Os.53309.1.S1_at--338--2651Chr07:28477718..28477742 (25 bp)
AACCAATGTAGCTTGTAGCCCTCTT
LOC_Os07g47650
Os.53309.1.S1_at--412--10811Chr07:28477749..28477773 (25 bp)
TTGTATGGCCTATTGCTGAGCTTGC
LOC_Os07g47650
Os.53309.1.S1_at--968--5531Chr07:28477874..28477898 (25 bp)
GAAACAGCACCTACAGTTGTCTCAT
LOC_Os07g47650
Os.53309.1.S1_at--499--3891Chr07:28477900..28477924 (25 bp)
CTGTGCAGAGTTTCTATCCATGGAT
LOC_Os07g47650
Os.53309.1.S1_at--255--3151Chr07:28477950..28477974 (25 bp)
AATTCATGCATTCTCTTCTAGGACC
LOC_Os07g47650
Target Sequence 
ATTGTGGTAGGCTGGTAGCACCTCCTGCTGAGAAATGAGGATGCTTCACTACTGGGCAGCAGAGCACTGATAAATCTGGC
TGGATGACAAGTTAAAGATAATTCAGAAAATTGTGTTTCAATTCCTTATCGTCTGGATGCTGGAAGAAGGCATTTGGAAT
TCTACCCAGCAAAAATCATGCATTTGGATCTCTCTTAGACATTGAACATATTTGATGAAGCAGAAGTTTTGCCTTAAACA
CTATTTATTCTTCATTGCCGGTCAGTTGTAATTGTAAGATAACCAATGTAGCTTGTAGCCCTCTTGTATAGTTGTATGGC
CTATTGCTGAGCTTGCTGTGCCCGTGTGTGGCAGCATTAGTTGTGTTTAAACATATCGAATTACTTTGCTAGCTTGGGCC
AGTAGTGCAAATTGTTAAAACCAGTTTGGCCCAAGAGAAACAGCACCTACAGTTGTCTCATTCTGTGCAGAGTTTCTATC
CATGGATGTACCCCTAAATAAACTATGAAATTAATTCATGCATTCTCTTCTAGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis