Browse Element(s) Details


Os.48988.1.S1_at

Description gb:AK058245.1
DB_XREF= gi:32968263
TID=Os.48988.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-A06, full insert sequence.
FL= gb:AK058245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g477108/1160S ribosomal protein L22-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein
LOC_Os07g47700Os.7085.2.S1_x_at11/117+28493024..28496411NAD-dependent epimerase/dehydratase family protein, putative, expressed
LOC_Os07g47710Os.48988.1.S1_at8/117+28499227..2850069860S ribosomal protein L22-2, putative, expressed
LOC_Os07g47720Os.56867.1.S1_at11/117+28501369..28503801pentatricopeptide, putative, expressed
LOC_Os07g47730OsAffx.21897.5.S1_x_at4/117+28510359..28513299retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47740NANA7+28513619..28519714retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005840cellular_componentribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48988.1.S1_at--237--2971Chr07:28500354..28500378 (25 bp)
AATGTGCGGGACTGGCTACGTGTTA
LOC_Os07g47710
Os.48988.1.S1_at--249--1951Chr07:28500364..28500388 (25 bp)
ACTGGCTACGTGTTATTGCGGCTAA
LOC_Os07g47710
Os.48988.1.S1_at--113--5831Chr07:28500393..28500417 (25 bp)
GACCGCAATGTCTATGAGCTCAGAT
LOC_Os07g47710
Os.48988.1.S1_at--331--5911Chr07:28500408..28500432 (25 bp)
GAGCTCAGATACTTCAACATTGCTG
LOC_Os07g47710
Os.48988.1.S1_at--927--6111Chr07:28500458..28500482 (25 bp)
GAGTGTATTCCACATATATCTTAGT
LOC_Os07g47710
Os.48988.1.S1_at--1089--6471Chr07:28500502..28500526 (25 bp)
GATACTTCATCTTAGTACCTCTAGT
LOC_Os07g47710
Os.48988.1.S1_at--150--6991Chr07:28500516..28500540 (25 bp)
GTACCTCTAGTTATTCAATCCATGT
LOC_Os07g47710
Os.48988.1.S1_at--802--3031Chr07:28500580..28500604 (25 bp)
AATCCTTATATTTGGTCGCCTCAAC
LOC_Os07g47710
Os.48988.1.S1_at--109--4771Chr07:28500705..28500729 (25 bp)
GCTGCTTCGCAATACCTGTGTGGAA
NONE
Os.48988.1.S1_at--860--7451Chr07:28500780..28500804 (25 bp)
GTGTCTGGTAGTTTGAAAGTCCTTC
NONE
Os.48988.1.S1_at--528--2831Chr07:28500796..28500820 (25 bp)
AAGTCCTTCGTGAACTTGTTTGGAT
NONE
Target Sequence 
AATGTGCGGGACTGGCTACGTGTTATTGCGGCTAACAAGGACCGCAATGTCTATGAGCTCAGATACTTCAACATTGCTGA
GAACGAGGGCGAGGAGGAAGACTAGAGTGTATTCCACATATATCTTAGTTTTGGAGTTGTTGAATTTTGATACTTCATCT
TAGTACCTCTAGTTATTCAATCCATGTTATGTTATGCTGTGGNTCAACTTGGATGGTTAATTTGAAGAATCCTTATATTT
GGTCGCCTCAACTTCAAGNAGTGNCTNNTGCTAATGATGACTTNNNNANNNNNNANNGCNNNNNGNNNNNTNCNTNNNNN
GNTNNGTTTGTTTATTACTGCTGCTTCGCAATACCTGTGTGGAACTTGTATAATCTCCAGCTGCGTCAGGATTCTGTTGT
GGAGTTGATGCTTGGTGTCTGGTAGTTTGAAAGTCCTTCGTGAACTTGTTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis