Browse Element(s) Details


OsAffx.16752.1.S1_at

Description tigr:9635.m04792
TID=OsAffx.16752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4754010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein
LOC_Os07g47550NANA7+28438338..28439762UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16752.1.S1_at--472--8231Chr07:28435513..28435537 (25 bp)
GGCAAGATCGTCCTGAACATACTCA
LOC_Os07g47540
OsAffx.16752.1.S1_at--852--6391Chr07:28435508..28435532 (25 bp)
GATCGTCCTGAACATACTCAAGAAG
LOC_Os07g47540
OsAffx.16752.1.S1_at--29--9731NONE
TCAAGAAGAAGCTTGCATTCGGCAA
NONE
OsAffx.16752.1.S1_at--1046--3351Chr07:28434817..28434841 (25 bp)
CATTCGGCAAGTGGGAAGGGTACAA
LOC_Os07g47540
OsAffx.16752.1.S1_at--582--4491Chr07:28434717..28434741 (25 bp)
GCCGTGCAGCAGCATCCTGTTCCAG
LOC_Os07g47540
OsAffx.16752.1.S1_at--444--4931Chr07:28434706..28434730 (25 bp)
GCATCCTGTTCCAGCGGAGGCGCCG
LOC_Os07g47540
OsAffx.16752.1.S1_at--1036--4551Chr07:28434627..28434651 (25 bp)
GCGCGCCATGCGGTACAAGATGGAC
LOC_Os07g47540
OsAffx.16752.1.S1_at--783--9791Chr07:28434573..28434597 (25 bp)
TAAGCAGCAGGCGTGGTGCAGGATC
LOC_Os07g47540
OsAffx.16752.1.S1_at--653--8611Chr07:28434560..28434584 (25 bp)
TGGTGCAGGATCGTCGACGGCGCCA
LOC_Os07g47540
OsAffx.16752.1.S1_at--846--4131Chr07:28434484..28434508 (25 bp)
CGCTGGGAGACGACGTGCTGACGCT
LOC_Os07g47540
OsAffx.16752.1.S1_at--682--8911Chr07:28434466..28434490 (25 bp)
TGACGCTGACGGTGGAGCCCAACGT
LOC_Os07g47540
Target Sequence 
GGCAAGATCGTCCTGAACATACTCAAGAAGAAGCTTGCATTCGGCAAGTGGGAAGGGTACAAATGGAGCAGCGGCGAGAG
GCAACGAGACGCTGCCGCCGGTGCAGGAGCAGGAGGGGCGTGGTTCACGGTGACGCGGCCGTGCAGCAGCATCCTGTTCC
AGCGGAGGCGCCGGCCGTCGTCGACGTGCGAGTTCCGGAGCGGCGGCGGCGGCGGCGACGACGGCGGGCGCGCCATGCGG
TACAAGATGGACGACTGCAGCGGCGGCGGCGGCGGCGGAGGTAAGCAGCAGGCGTGGTGCAGGATCGTCGACGGCGCCAC
CGGCGCCGTGGTGGCGGAGGTGAAGGGGAAGACGACGGCGGGCGGCGTGGCGCTGGGAGACGACGTGCTGACGCTGACGG
TGGAGCCCAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis