Browse Element(s) Details


OsAffx.16751.1.S1_at

Description tigr:9635.m04785
TID=OsAffx.16751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4747011/11Rf1 protein, mitochondrial precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed
LOC_Os07g47460OsAffx.16750.1.S1_at11/117+28370141..28371194expressed protein
LOC_Os07g47470OsAffx.16751.1.S1_at11/117+28371675..28373330Rf1 protein, mitochondrial precursor, putative
LOC_Os07g47480Os.7607.1.S1_at11/117+28380891..28382430heavy metal-associated domain containing protein, expressed
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16751.1.S1_at--1152--6211Chr07:28372196..28372220 (25 bp)
GAGGCCAAGAATCTATTGCGTATCA
LOC_Os07g47470
OsAffx.16751.1.S1_at--569--7591Chr07:28372054..28372078 (25 bp)
GGGCAGAACCTAGTCTGGTAACCTA
LOC_Os07g47470
OsAffx.16751.1.S1_at--1074--10171Chr07:28371934..28371958 (25 bp)
TATACTCTTATGCAGCGTTAGTCCA
LOC_Os07g47470
OsAffx.16751.1.S1_at--611--4631Chr07:28371920..28371944 (25 bp)
GCGTTAGTCCATGGGCACTGTGTCA
LOC_Os07g47470
OsAffx.16751.1.S1_at--1111--7691Chr07:28371845..28371869 (25 bp)
GGGTCTAAACCCAACTTGGTGGCAT
LOC_Os07g47470
OsAffx.16751.1.S1_at--1101--8271Chr07:28371825..28371849 (25 bp)
GGCATATACTGCTCTGATATCCGGC
LOC_Os07g47470
OsAffx.16751.1.S1_at--90--8011Chr07:28371777..28371801 (25 bp)
GGAGGCATTCCAGTTGTACGACAAT
LOC_Os07g47470
OsAffx.16751.1.S1_at--574--831Chr07:28371742..28371766 (25 bp)
ATGGATTGACCCCAGATGATGCTCT
LOC_Os07g47470
OsAffx.16751.1.S1_at--218--1311Chr07:28371729..28371753 (25 bp)
AGATGATGCTCTGTATTCTGCACTT
LOC_Os07g47470
OsAffx.16751.1.S1_at--1094--91Chr07:28371715..28371739 (25 bp)
ATTCTGCACTTGTAGGGAGCCTTCA
LOC_Os07g47470
OsAffx.16751.1.S1_at--664--8751Chr07:28371705..28371729 (25 bp)
TGTAGGGAGCCTTCACACGGATAAA
LOC_Os07g47470
Target Sequence 
GAGGCCAAGAATCTATTGCGTATCATGATTGAGAAGGGTGTCAGGCCAAACCATGTAAGCTACACTACGTTGATCAGCAT
CCATTGCAATGAAGGTGACATGGTCGAGGCAAGAAGGCTGTTTCGAGAGATGGCAGGAAATGGGGCAGAACCTAGTCTGG
TAACCTACAATGTTATGATGGATGGGTACATCAAGAAGGGGAGCATACGGGAGGCTGAGAGGTTCAAAAATGAGATGGAA
AAGAAAGGGCTTGTTCCAGACATATACTCTTATGCAGCGTTAGTCCATGGGCACTGTGTCAATGGGAAGGTGGATGTGGC
ATTGAGGCTGTTTGAAGAGATGAAGCAGAGGGGGTCTAAACCCAACTTGGTGGCATATACTGCTCTGATATCCGGCCTGG
CCAAGGAAGGAAGATCAGAGGAGGCATTCCAGTTGTACGACAATATGCTGGGAGATGGATTGACCCCAGATGATGCTCTG
TATTCTGCACTTGTAGGGAGCCTTCACACGGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis