Browse Element(s) Details


OsAffx.16748.1.S1_at

Description tigr:9635.m04777
TID=OsAffx.16748.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4739011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16748.1.S1_at--559--5111Chr07:28338326..28338350 (25 bp)
GCACTACCAGTACCTGGTCCACAAG
LOC_Os07g47390
OsAffx.16748.1.S1_at--777--6971Chr07:28338335..28338359 (25 bp)
GTACCTGGTCCACAAGGTGCAGAGC
LOC_Os07g47390
OsAffx.16748.1.S1_at--952--2891Chr07:28338348..28338372 (25 bp)
AAGGTGCAGAGCACCACCGAGCACT
LOC_Os07g47390
OsAffx.16748.1.S1_at--919--1351Chr07:28338355..28338379 (25 bp)
AGAGCACCACCGAGCACTGCGGCGT
LOC_Os07g47390
OsAffx.16748.1.S1_at--726--7311Chr07:28338378..28338402 (25 bp)
GTGCTCAGCCTGTCGTACCGGCTAG
LOC_Os07g47390
OsAffx.16748.1.S1_at--992--8671Chr07:28338388..28338412 (25 bp)
TGTCGTACCGGCTAGGCCCCGTCGT
LOC_Os07g47390
OsAffx.16748.1.S1_at--919--3851Chr07:28338448..28338472 (25 bp)
CTGTCCCGGCGTACCTGGTGGTGCC
LOC_Os07g47390
OsAffx.16748.1.S1_at--291--8611Chr07:28338466..28338490 (25 bp)
TGGTGCCGTGCTACGCGAACGCGCC
LOC_Os07g47390
OsAffx.16748.1.S1_at--512--2791Chr07:28338570..28338594 (25 bp)
AAGAGGAGCGGTGACTTTGGGCAGT
LOC_Os07g47390
OsAffx.16748.1.S1_at--1090--2031Chr07:28338583..28338607 (25 bp)
ACTTTGGGCAGTGGCTCGGCGGCGC
LOC_Os07g47390
OsAffx.16748.1.S1_at--679--5751Chr07:28338660..28338684 (25 bp)
GACGCCGGGTACAAAACCCTGATCG
LOC_Os07g47390
Target Sequence 
GCACTACCAGTACCTGGTCCACAAGGTGCAGAGCACCACCGAGCACTGCGGCGTGCTCAGCCTGTCGTACCGGCTAGGCC
CCGTCGTCGTGCCGGCGCCGCCGCTGGCAGCGGACACCGGCGCTGTCCCGGCGTACCTGGTGGTGCCGTGCTACGCGAAC
GCGCCGCCGTACGTCTACCTGTCGCCGGCCAATCCTGCCCGCGGCGAGGCCGCGTCGGCGTCGCCGTCGCCGCCGCCGCG
GCGCAAGAGGAGCGGTGACTTTGGGCAGTGGCTCGGCGGCGCCGTCCGGGGAATGTTGTCCGGCGAGGCCATGTCGCCGG
ACACGGCGGCCTACGACGCCGGGTACAAAACCCTGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis