Browse Element(s) Details


Os.26494.1.S1_at

Description gb:AK061154.1
DB_XREF= gi:32971172
TID=Os.26494.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative shock protein SRC2 (P0625E02.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F08, full insert sequence.
FL= gb:AK099020.1 gb:AK061154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4740011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26494.1.S1_at--988--5651Chr07:28343217..28343241 (25 bp)
GACAGGCACGTGTCGACGCCGTCAC
LOC_Os07g47400
Os.26494.1.S1_at--351--5171Chr07:28343296..28343320 (25 bp)
GCAAGCATGGCAGCCTGGAGTTCGA
LOC_Os07g47400
Os.26494.1.S1_at--370--7991Chr07:28343442..28343466 (25 bp)
GGATGGGCCGTCTACTAAACCGTCG
LOC_Os07g47400
Os.26494.1.S1_at--192--871Chr07:28343472..28343496 (25 bp)
ATGGCTGCAGGTGCAGCGCCATGCA
LOC_Os07g47400
Os.26494.1.S1_at--922--9431Chr07:28343500..28343524 (25 bp)
TCGGTCGGCGAAGATGCTTAGCTGA
LOC_Os07g47400
Os.26494.1.S1_at--217--4751Chr07:28343520..28343544 (25 bp)
GCTGAATAAAAGTCTCTGGTTTTCT
LOC_Os07g47400
Os.26494.1.S1_at--75--10351Chr07:28343546..28343570 (25 bp)
TTTTTGGCCTTTTGAGATTAGCTCA
LOC_Os07g47400
Os.26494.1.S1_at--640--3112Chr07:28343585..28343609 (25 bp)
AATTTACTTTGGCTGAGAGTTTGTA
LOC_Os07g47400
Os.26494.1.S1_at--1001--1191Chr07:28343600..28343624 (25 bp)
AGAGTTTGTAACTCTTCCTCTTCGG
LOC_Os07g47400
Os.26494.1.S1_at--19--3631Chr07:28343613..28343637 (25 bp)
CTTCCTCTTCGGCTAGTGAATTAAT
LOC_Os07g47400
Os.26494.1.S1_at--496--7351Chr07:28343628..28343652 (25 bp)
GTGAATTAATCGACTTGTTGTATAT
LOC_Os07g47400
Target Sequence 
GACAGGCACGTGTCGACGCCGTCACCGGCGAAGGCCGACTGGCAGATGGTGGGCACGCCGACGGCGACGAAAGGGGCGAG
CAAGCATGGCAGCCTGGAGTTCGAGCGGGGGCTCAACGCCGGGCTGGTCGGCGGCGCCATCGGCGGGATGCTGGTCGGCA
CCGAGATGGTGTCCGACGCGGCGTTCTACCACGCCGGCTACAGGGCCGGGCTCGCCGACCGCGACGGATGGGCCGTCTAC
TAAACCGTCGTCGCCATGGCTGCAGGTGCAGCGCCATGCATGGTCGGTCGGCGAAGATGCTTAGCTGAATAAAAGTCTCT
GGTTTTCTTTTTTTGGCCTTTTGAGATTAGCTCAATAAAAGTCGATGAAATTTACTTTGGCTGAGAGTTTGTAACTCTTC
CTCTTCGGCTAGTGAATTAATCGACTTGTTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis