Browse Element(s) Details


Os.20659.1.S1_x_at

Description gb:AK067946.1
DB_XREF= gi:32977964
TID=Os.20659.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU082379(C62630),AU082378(C62630),AU056897(S20963), AU056898(S20963)~similar to Arabidopsis thaliana chromosome3, 3g62900~unknown protein (P0625E02.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123A08, full insert sequence.
FL= gb:AK067946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4736011/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20659.1.S1_x_at--1075--7171Chr07:28327963..28327987 (25 bp)
GTCTGGCATAGATTCTAACCCTGGA
LOC_Os07g47360
Os.20659.1.S1_x_at--295--8551Chr07:28328002..28328026 (25 bp)
TGGAGACGTTCCTGATGAGGCCAAA
LOC_Os07g47360
Os.20659.1.S1_x_at--800--8431Chr07:28328020..28328044 (25 bp)
GGCCAAAGCTTTGCCTTCAAAATCG
LOC_Os07g47360
Os.20659.1.S1_x_at--880--10511Chr07:28328035..28328059 (25 bp)
TTCAAAATCGATGGCCTTACAGGGT
LOC_Os07g47360
Os.20659.1.S1_x_at--192--8031Chr07:28328070..28328094 (25 bp)
GGAGTGATGTTCCTCCATCAAAGTA
LOC_Os07g47360
Os.20659.1.S1_x_at--574--10531Chr07:28328185..28328209 (25 bp)
TTCTTACCCCTCTGATGCACAAAAA
LOC_Os07g47360
Os.20659.1.S1_x_at--849--8051Chr07:28328251..28328275 (25 bp)
GGAGAGTCAGCACAATTCAACACCT
LOC_Os07g47360
Os.20659.1.S1_x_at--755--1751Chr07:28328272..28328296 (25 bp)
ACCTCCGGTGAGTAAAATGTCTATT
LOC_Os07g47360
Os.20659.1.S1_x_at--374--5431Chr07:28328378..28328402 (25 bp)
GAACCGTTTGCCATGACAGATTCAA
LOC_Os07g47360
Os.20659.1.S1_x_at--194--4871Chr07:28328455..28328479 (25 bp)
GCTATTTGAGGACAGCACACCTTTT
LOC_Os07g47360
Os.20659.1.S1_x_at--636--6911Chr07:28328493..28328517 (25 bp)
GTATGTCTGAACCACCTGAAAATCG
LOC_Os07g47360
Target Sequence 
GTCTGGCATAGATTCTAACCCTGGATATGATTTAGCTAGTGGAGACGTTCCTGATGAGGCCAAAGCTTTGCCTTCAAAAT
CGATGGCCTTACAGGGTTCGAGTGAAAGGAGTGATGTTCCTCCATCAAAGTATAAAAGTGTTTCTAAGTATAATTCTTCA
GAAAAATCTAAGAGATCTAAGGATGGGGATGTTTTTCTTCCTGAAGACAAGAACAAGGAACATTCTTACCCCTCTGATGC
ACAAAAACCAGATTTGTCTAGTAAGAAGAGGATAGTGAAGGAATGGGAGGAGAGTCAGCACAATTCAACACCTCCGGTGA
GTAAAATGTCTATTGTAAACCAAAGCTCTTCTTCCAAAGAAACCTGCAAGGATCAGAACTTAAAGGAAACAAAGTCAAAG
TTAACAAAGTCTGAAGAACCGTTTGCCATGACAGATTCAAAATCAATAAAAGTTGCACATTCTAATCAAACTTCACGCAA
TCTAAATAATGAGCTATTTGAGGACAGCACACCTTTTGCTGTTAAAAGTGGTATGTCTGAACCACCTGAAAATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20659.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis