Browse Element(s) Details


Os.15701.1.S1_x_at

Description gb:AK100652.1
DB_XREF= gi:32985861
TID=Os.15701.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative potassium transporter (P0625E02.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111D12, full insert sequence.
FL= gb:AK100652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4735010/11Potassium transporter 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15701.1.S1_x_at--1102--231Chr07:28312818..28312842 (25 bp)
ATATATCCCTGTCTTGTGCTGCAAT
LOC_Os07g47350
Os.15701.1.S1_x_at--501--8271Chr07:28312787..28312811 (25 bp)
GGCAGGCTGCATTTCTTTCCAGAAA
LOC_Os07g47350
Os.15701.1.S1_x_at--738--3051Chr07:28312645..28312757 (25 bp)
AATCTGTACCAAGATCCCTGTTTTG
LOC_Os07g47350
Os.15701.1.S1_x_at--984--8431Chr07:28312621..28312645 (25 bp)
GGCCAGTGTTTGTCATTGCAACTCT
LOC_Os07g47350
Os.15701.1.S1_x_at--826--1151Chr07:28312576..28312600 (25 bp)
AGTCTATCATATCTGCTACCTTTTC
LOC_Os07g47350
Os.15701.1.S1_x_at--293--10711Chr07:28312429..28312453 (25 bp)
TTGCTGTGACACTTGGTTTCCGAGA
LOC_Os07g47350
Os.15701.1.S1_x_at--698--2251NONE
AAATGCTTACGGTCTTGCGTGTATC
NONE
Os.15701.1.S1_x_at--820--211Chr07:28311751..28311775 (25 bp)
ATTTGTCGTGGCGTTTGGGTCAATC
LOC_Os07g47350
Os.15701.1.S1_x_at--69--6991Chr07:28311718..28311742 (25 bp)
GTACCTGTCGGCAGCAGTCACTAAA
LOC_Os07g47350
Os.15701.1.S1_x_at--469--3051Chr07:28311670..28311694 (25 bp)
AATCGTATTTGCCTTCGTGTTCATG
LOC_Os07g47350
Os.15701.1.S1_x_at--258--4811Chr07:28311646..28311670 (25 bp)
GCTCGTCATGTACGTATGGCACTAC
LOC_Os07g47350
Target Sequence 
ATATATCCCTGTCTTGTGCTGCAATACATGGGGCAGGCTGCATTTCTTTCCAGAAACATGTCAGCTGTAGAAGATAGCTT
TTACCAATCTGTACCAAGATCCCTGTTTTGGCCAGTGTTTGTCATTGCAACTCTTGCAGCGGTTGTGGGCAGCCAGTCTA
TCATATCTGCTACCTTTTCAATTGTTAAGCAGTGTCTTTCTTTGGGATGTTTTCCACGGGTTAAGGTCGTGCATACATCA
AGGTGGATCCATGGTCAGATTTACATACCTGAGATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTT
CCGAGACACGACAGTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTGATGGCAT
TGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTCGTGGCGTTTGGGTCAATCGAAGTGGTG
TACCTGTCGGCAGCAGTCACTAAAGTTCCTCAGGGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCAT
GTACGTATGGCACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15701.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis