Browse Element(s) Details


OsAffx.28941.1.S1_x_at

Description gb:NM_186115.1
DB_XREF= gi:34899315
GEN=P0625E02.22
TID=OsAffx.28941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0625E02.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4732010/11hypothetical protein
LOC_Os05g250501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed
LOC_Os07g47300Os.9678.1.S1_at11/117+28275827..28279366GTP1/OBG family protein, putative, expressed
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28941.1.S1_x_at--260--8552Chr07:28288119..28288143 (25 bp)
TGGATGCGGCGTTCGAGTCGTCATT
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--6--9391Chr07:28288131..28288155 (25 bp)
TCGAGTCGTCATTCTCGGTGGCGGC
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--18--7551Chr07:28288148..28288172 (25 bp)
GTGGCGGCAGCGTCCAAGTTATCGT
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--901--1571Chr07:28288156..28288180 (25 bp)
AGCGTCCAAGTTATCGTTCCCGATG
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--228--3231Chr07:28288162..28288186 (25 bp)
CAAGTTATCGTTCCCGATGGTGGCG
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--437--10131Chr07:28288167..28288191 (25 bp)
TATCGTTCCCGATGGTGGCGGAGTT
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--1162--10751NONE
TTGATGTCCAGGAGGCGCAGGCGGC
NONE
OsAffx.28941.1.S1_x_at--1049--4491Chr07:28288795..28288819 (25 bp)
GCCGTCGTCGTTCGCTGCAAGAAGA
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--541--4251Chr07:28288860..28288884 (25 bp)
CCTAGAGGAGGGTGGTGATCCCCAT
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--927--7751Chr07:28288873..28289031 (25 bp)
GGTGATCCCCATCAGGATTCAAATC
LOC_Os07g47320
OsAffx.28941.1.S1_x_at--924--6372Chr07:28288876..28289034 (25 bp)
GATCCCCATCAGGATTCAAATCCTA
LOC_Os07g47320
Target Sequence 
TGGATGCGGCGTTCGAGTCGTCATTCTCGGTGGCGGCAGCGTCCAAGTTATCGTTCCCGATGGTGGCGGAGTTGATGTCC
AGGAGGCGCAGGCGGCGGCGCGCATGGACCGCCCGCGCCACGCCGTCGTCGTTCGCTGCAAGAAGAAGAAGAAGGGCGCC
GCCGATGAGCCAGCCGGCGAGCCCGGCCTAGAGGAGGGTGGTGATCCCCATCAGGATTCAAATCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28941.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis