Browse Element(s) Details


Os.46006.1.S1_at

Description gb:AK120101.1
DB_XREF= gi:37989724
TID=Os.46006.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc-finger protein (P0450A04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022K23, full insert sequence.
FL= gb:AK120101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4714011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46006.1.S1_at--818--2591Chr07:28183973..28183997 (25 bp)
AACGCAAGCTCTGCCCAAGAAGGGA
LOC_Os07g47140
Os.46006.1.S1_at--684--5091Chr07:28183920..28183944 (25 bp)
GCACGGTGATTTCGCGCTACAAGGA
LOC_Os07g47140
Os.46006.1.S1_at--997--6351Chr07:28183559..28183583 (25 bp)
GATCCGGTACGAATCGCGCAAGGCT
LOC_Os07g47140
Os.46006.1.S1_at--699--7631Chr07:28183508..28183532 (25 bp)
GGGACGCTTCGCGAAGTCGAACTAG
LOC_Os07g47140
Os.46006.1.S1_at--20--10551Chr07:28183473..28183497 (25 bp)
TTCTTGGTCGGCTTATCAGTTTCAG
LOC_Os07g47140
Os.46006.1.S1_at--668--7451Chr07:28183383..28183407 (25 bp)
GTGTCGGCAGCATATGATTTCCTTG
LOC_Os07g47140
Os.46006.1.S1_at--662--10111Chr07:28183371..28183395 (25 bp)
TATGATTTCCTTGCGTTTTCTTTTC
LOC_Os07g47140
Os.46006.1.S1_at--931--9551Chr07:28183353..28183377 (25 bp)
TCTTTTCCCAGCTTTGTTTGTGTGG
LOC_Os07g47140
Os.46006.1.S1_at--861--4371Chr07:28183276..28183300 (25 bp)
CCAACTCTTCTGTCTCGTTGTAGAA
LOC_Os07g47140
Os.46006.1.S1_at--1071--7411Chr07:28183227..28183251 (25 bp)
GTGTTGCCATGATGTTGCTTTGTTC
LOC_Os07g47140
Os.46006.1.S1_at--1135--3831Chr07:28183197..28183221 (25 bp)
CTGATTTAAGACTCCTACTGGTTAT
LOC_Os07g47140
Target Sequence 
AACGCAAGCTCTGCCCAAGAAGGGAGTCTATGACATCGCCTACCCTGACAGGGGCACGGTGATTTCGCGCTACAAGGAGA
AGAGGAAGAACAGAAGATTCGACAAGCAGATCCGGTACGAATCGCGCAAGGCTCGTGCCGATGGCAGATTGAGGATCAAG
GGACGCTTCGCGAAGTCGAACTAGGCATGATGATTTCTTGGTCGGCTTATCAGTTTCAGTTTNCTAGCATGGGCAAGAGG
GACCCTGCTATACAATNTCCTCTATNTTGCATGATGTTATTATTGATGTGTCGGCAGCATATGATTTCCTTGCGTTTTCT
TTTCCCAGCTTTGTTTGTGTGGTAGCATTGTTCAGTAGAAGTAATAACTACATTTGAGGAGAGTTGATCCAAATCCAACT
CTTCTGTCTCGTTGTAGAAAAGGTTCAGTGCTAGATGTTTGTTGTGTTGCCATGATGTTGCTTTGTTCCAATTCTGATTT
AAGACTCCTACTGGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis