Browse Element(s) Details


OsAffx.27556.1.S1_s_at

Description gb:NM_186091.1
DB_XREF= gi:34899267
GEN=P0450A04.25
TID=OsAffx.27556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) homeobox 1-like protein (P0450A04.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4713011/11hypothetical protein
LOC_Os06g106001/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27556.1.S1_s_at--224--8032Chr07:28180845..28180869 (25 bp)
GGAGGTGAACTTCGTCCGCTACTGC
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--441--391Chr07:28180897..28180921 (25 bp)
ATCACTGACATCTTCGTCAACCTGC
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--727--7191Chr07:28180971..28180995 (25 bp)
GTCGGGATGCCTCATCGCTAACATG
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--730--9811Chr07:28180989..28181013 (25 bp)
TAACATGGCCAATAGCTACTCCGAG
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--942--291Chr07:28181000..28181133 (25 bp)
ATAGCTACTCCGAGGTGACCAGGGT
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--210--8931Chr07:28181124..28181148 (25 bp)
TGACCAGGGTCGAACACATGGAGGT
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--939--8531Chr07:28181148..28181172 (25 bp)
TGGAGGAGAAGAACCCGATCAACGT
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--229--4051Chr07:28181163..28181187 (25 bp)
CGATCAACGTGCTCTACCGTGACCT
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--1027--5831Chr07:28181183..28181207 (25 bp)
GACCTCGTGCTGAGCGGCGATGTAT
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--530--391Chr07:28181291..28181315 (25 bp)
ATCACCGGAGGTATGCACACGCTAT
LOC_Os07g47130
OsAffx.27556.1.S1_s_at--792--9991Chr07:28181326..28181350 (25 bp)
TAGCCCAGATCCAGAGCTTCGAATC
LOC_Os07g47130
Target Sequence 
GGAGGTGAACTTCGTCCGCTACTGCCGACAGATCGAGCAGGGGCTATGGGCCATCACTGACATCTTCGTCAACCTGCAGC
GCGACGCCTACTTCGGCGTGCCACCGCTGCGTTCCCGCCGACTCCCGTCGGGATGCCTCATCGCTAACATGGCCAATAGC
TACTCCGAGGTGACCAGGGTCGAACACATGGAGGTGGAGGAGAAGAACCCGATCAACGTGCTCTACCGTGACCTCGTGCT
GAGCGGCGATGTATTCGGGGCGCACTGCTGGCTCGCCGCGCTCCAGCGCGCGTGCGACCGCTACGCCTCCCTCGTCGCGC
TCGGCGTCCCGCACCACATCACCGGAGGTATGCACACGCTATGCCACGCACCTAGCCCAGATCCAGAGCTTCGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27556.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis