Browse Element(s) Details


OsAffx.28939.1.S1_at

Description tigr:9635.m04746
TID=OsAffx.28939.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4712011/11Glycosyl hydrolase family 14 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009570cellular_componentchloroplast stroma
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28939.1.S1_at--791--4291Chr07:28177762..28177786 (25 bp)
CCTCTCGTGGTACGCCGGTCAGCTG
LOC_Os07g47120
OsAffx.28939.1.S1_at--631--4591Chr07:28177668..28177692 (25 bp)
GCGAAGGTGCCGTTCATGCACTGGT
LOC_Os07g47120
OsAffx.28939.1.S1_at--1121--1031Chr07:28177664..28177688 (25 bp)
AGGTGCCGTTCATGCACTGGTGGCA
LOC_Os07g47120
OsAffx.28939.1.S1_at--10--10531Chr07:28177656..28177680 (25 bp)
TTCATGCACTGGTGGCACGGCGCGC
LOC_Os07g47120
OsAffx.28939.1.S1_at--140--4251Chr07:28177607..28177631 (25 bp)
CCGGATTCTACAAGAGCGGCGGGAA
LOC_Os07g47120
OsAffx.28939.1.S1_at--425--7031Chr07:28177576..28177600 (25 bp)
GTACAGCCCGGTGGCGAAGATGTTC
LOC_Os07g47120
OsAffx.28939.1.S1_at--935--7991Chr07:28177520..28177544 (25 bp)
GGATGGACGTGTGCATGAACAAGCA
LOC_Os07g47120
OsAffx.28939.1.S1_at--807--8971Chr07:28177505..28177529 (25 bp)
TGAACAAGCAGCACCGGATCACGGG
LOC_Os07g47120
OsAffx.28939.1.S1_at--1096--7331Chr07:28177458..28177482 (25 bp)
GTGCAGATCAAGAACGCGTGCCGCC
LOC_Os07g47120
OsAffx.28939.1.S1_at--779--1611Chr07:28177310..28177334 (25 bp)
AGCGGATGGGCGAGGCCTTCTTCTC
LOC_Os07g47120
OsAffx.28939.1.S1_at--1122--1491Chr07:28177280..28177304 (25 bp)
AGCACTGGCCGGCCTTCGTCGAGTT
LOC_Os07g47120
Target Sequence 
CCTCTCGTGGTACGCCGGTCAGCTGGTCGGGCACGGCGACCGCGTGCTCGCCGTGGCGAACGGCGCGCTCGGCGACACGC
CGGTGGAGGCGTCGGCGAAGGTGCCGTTCATGCACTGGTGGCACGGCGCGCGGTCGCGGCCGGCGGAGGCGGTGGCCGGA
TTCTACAAGAGCGGCGGGAAGAACGGGTACAGCCCGGTGGCGAAGATGTTCGCGCGGCGGGGGTGCACGGTGATCGTGCC
GGGGATGGACGTGTGCATGAACAAGCAGCACCGGATCACGGGGTCCAGCCCCGACCAGCTGCTGGTGCAGATCAAGAACG
CGTGCCGCCGCCACGGCGCCAGGATCGCCGGCGAGAACGCGTCGCTCGTCGTCACGCACACCAGCAGCTTCTCCCGCATC
CGGAGCAACGTGCTCACCGCCGAGCGGATGAGGCCGGGGCACTTCACCTACCAGCGGATGGGCGAGGCCTTCTTCTCGCC
GGAGCACTGGCCGGCCTTCGTCGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis