Browse Element(s) Details


Os.32357.1.S1_at

Description gb:AK105211.1
DB_XREF= gi:32990420
TID=Os.32357.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B08, full insert sequence.
FL= gb:AK105211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g469508/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46900OsAffx.31756.3.S1_x_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_x_at10/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_at5/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.5.S1_x_at1/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46910Os.30239.1.S1_at11/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.16866.2.A1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.28438.4.S1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_x_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.44598.1.S1_x_at1/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930Os.44598.1.S1_x_at11/117+28052133..28054681oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940Os.16866.2.A1_x_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940OsAffx.22529.1.S1_s_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950Os.32357.1.S1_x_at11/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.32357.1.S1_at8/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.10002.1.S1_at7/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46960NANA7+28064437..28065364hypothetical protein
LOC_Os07g46970NANA7+28067733..28069627NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.16866.2.A1_x_at11/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980OsAffx.20394.1.S1_s_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.32357.1.S1_x_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46990Os.4169.1.S1_at11/117+28073855..28075969Superoxide dismutase 2, putative, expressed
LOC_Os07g47000Os.45962.1.S1_a_at2/117+28076380..28078098hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32357.1.S1_at--537--191Chr07:28060962..28060986 (25 bp)
ATTTCCAACAGACGGTGGCGAGGCA
LOC_Os07g46950
Os.32357.1.S1_at--999--4791Chr07:28061274..28061298 (25 bp)
GCTCAGCTTGAATTGGTGACGGGAT
LOC_Os07g46950
Os.32357.1.S1_at--183--3751Chr07:28061275..28061299 (25 bp)
CTCAGCTTGAATTGGTGACGGGATT
LOC_Os07g46950
Os.32357.1.S1_at--30--9671Chr07:28061276..28061300 (25 bp)
TCAGCTTGAATTGGTGACGGGATTG
LOC_Os07g46950
Os.32357.1.S1_at--790--2531Chr07:28061417..28061441 (25 bp)
AACTCAATGGATTATTCCGTTTGCG
LOC_Os07g46950
Os.32357.1.S1_at--514--2011Chr07:28061418..28061442 (25 bp)
ACTCAATGGATTATTCCGTTTGCGT
LOC_Os07g46950
Os.32357.1.S1_at--276--3211Chr07:28061421..28061445 (25 bp)
CAATGGATTATTCCGTTTGCGTGTG
LOC_Os07g46950
Os.32357.1.S1_at--489--2971Chr07:28061422..28061446 (25 bp)
AATGGATTATTCCGTTTGCGTGTGC
LOC_Os07g46950
Target Sequence 
ATTTCCAACAGACGGTGGCGAGGCAGCTGGCGCGCNACGGCGTGCGGGTNAACACCATCTCGCCGCACGCCATCCCGACG
GCTATGGCGCTGGGCATCATCGCCGAGACGTTCCCGGCGGCCACCGCGGAGGAGGTGAGGAGGATGGTGACGAGGGAGAT
GCAGGAGCTGGAAGGGGCGTCGCTGGAGGTGGAAGACGTGGCGAGGGCGGCCGTCTTCTTGGCGTCCGACGAGNGCCAAG
TTCATCANCGGCCACAANCTCGTCGTCGACGGCGGCTTCANCTGTAGGCAANGGTGCTNCGTCCGGGANTCCTCCTGGCT
CAGCTTGAATTGGTGACGGGATTGTCACGCAAAGCTTAGCTCGTCCAGTGCTTATCTCAGTCTTATCCGTACATCGACAA
GTCTGTCCAAATTTGGAGGTTGCTGTCTCGGCATTTCAAATCCTTCGTTCTTTCTCAGCAAACTCAATGGATTATTCCGT
TTGCGTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis