Browse Element(s) Details


Os.44598.1.S1_x_at

Description gb:NM_186066.1
DB_XREF= gi:34899217
GEN=OJ1343_D04.26
TID=Os.44598.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alcohol dehydrogenase-like protein~contains EST AU165528(E2141) (OJ1343_D04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) alcohol dehydrogenase-like protein~contains EST AU165528(E2141) (OJ1343_D04.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4693011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g197801/11hypothetical protein
LOC_Os07g469201/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46880NANA7+28023724..28029879transposon protein, putative, unclassified
LOC_Os07g46890NANA7+28030524..28033752retrotransposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_x_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_x_at10/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_at5/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.5.S1_x_at1/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46910Os.30239.1.S1_at11/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.16866.2.A1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.28438.4.S1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_x_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.44598.1.S1_x_at1/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930Os.44598.1.S1_x_at11/117+28052133..28054681oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940Os.16866.2.A1_x_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940OsAffx.22529.1.S1_s_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950Os.32357.1.S1_x_at11/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.32357.1.S1_at8/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.10002.1.S1_at7/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46960NANA7+28064437..28065364hypothetical protein
LOC_Os07g46970NANA7+28067733..28069627NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.16866.2.A1_x_at11/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980OsAffx.20394.1.S1_s_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.32357.1.S1_x_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46990Os.4169.1.S1_at11/117+28073855..28075969Superoxide dismutase 2, putative, expressed
LOC_Os07g47000Os.45962.1.S1_a_at2/117+28076380..28078098hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44598.1.S1_x_at--946--2591Chr07:28054139..28054163 (25 bp)
AACGCCGGGATCACAAGCTCCTCTG
LOC_Os07g46930
Os.44598.1.S1_x_at--499--4251Chr07:28054143..28054167 (25 bp)
CCGGGATCACAAGCTCCTCTGTGGG
LOC_Os07g46930
Os.44598.1.S1_x_at--644--7391Chr07:28054259..28054283 (25 bp)
GTGATGGCACCACGACGCACCGGCT
LOC_Os07g46930
Os.44598.1.S1_x_at--998--4611Chr07:28054323..28054347 (25 bp)
GCGAGATGCCCCACGCGTACAACGT
LOC_Os07g46930
Os.44598.1.S1_x_at--752--9851Chr07:28054340..28054364 (25 bp)
TACAACGTCTCCAAGGCGGCGGTCA
LOC_Os07g46930
Os.44598.1.S1_x_at--254--3931Chr07:28054356..28054380 (25 bp)
CGGCGGTCATAGGTGTGGTGCGGTC
LOC_Os07g46930
Os.44598.1.S1_x_at--1137--8971Chr07:28054416..28054440 (25 bp)
TGAACGCGATCTCGCCGCTCGGCAT
LOC_Os07g46930
Os.44598.1.S1_x_at--349--5812Chr07:28054444..28054468 (25 bp)
GACGCCACTGGCGATGCGCGGGTTC
LOC_Os07g46930
Os.44598.1.S1_x_at--410--9451Chr07:28054467..28054491 (25 bp)
TCGGCGACATGCTGGCGTGGGCGGA
LOC_Os07g46930
Os.44598.1.S1_x_at--938--9612Chr07:28054512..28054536 (25 bp)
TCATCGAGGAGGACATGAACGAGCT
LOC_Os07g46930
Os.44598.1.S1_x_at--227--2111Chr07:28054524..28054548 (25 bp)
ACATGAACGAGCTAGAGGGCGCGAC
LOC_Os07g46930
Target Sequence 
AACGCCGGGATCACAAGCTCCTCTGTGGGGCACCTTGCCTCCCTCGACCTCGCCGACTTCGACCGCGTCATGGCGGTGAA
CGCCCGGGCGGTGCTCGCCGGCATCAAGCACGCCGCGCGCGTGATGGCACCACGACGCACCGGCTCCATCCTCTGCACGG
CCAGCGTGGCGGGCATGATGGGCGGCGAGATGCCCCACGCGTACAACGTCTCCAAGGCGGCGGTCATAGGTGTGGTGCGG
TCCGCCGCCGGCGAGCTGGCACGCCACGGCGTGCGGCTGAACGCGATCTCGCCGCTCGGCATCGCGACGCCACTGGCGAT
GCGCGGGTTCGGCGACATGCTGGCGTGGGCGGACGCCGAGCGGGTGAGGCGGCTCATCGAGGAGGACATGAACGAGCTAG
AGGGCGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44598.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis