Browse Element(s) Details


OsAffx.28936.1.S1_x_at

Description tigr:9635.m04717
TID=OsAffx.28936.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, short chain dehydrogenasereductase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4686011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g468461/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46830OsAffx.22529.1.S1_s_at11/117+27989502..27990897NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840Os.27920.1.A1_at11/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840OsAffx.22529.1.S1_s_at1/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_s_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.1.S1_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_x_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.7935.2.S1_x_at4/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846OsAffx.28936.1.S1_x_at1/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.2.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.28282.2.S1_x_at4/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_x_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860Os.7935.2.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.31756.5.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46870OsAffx.31756.5.S1_x_at11/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.53426.1.S1_at4/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.28282.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.7935.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870OsAffx.31756.3.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46880NANA7+28023724..28029879transposon protein, putative, unclassified
LOC_Os07g46890NANA7+28030524..28033752retrotransposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_x_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_x_at10/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_at5/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.5.S1_x_at1/117+28036333..28042118transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28936.1.S1_x_at--154--5771Chr07:28012429..28012453 (25 bp)
GACGTCATGCACAACAACGCCGCCA
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--702--1012Chr07:28012462..28012486 (25 bp)
AGGTTCCCGCAGGACGACATGGCGT
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--876--4331Chr07:28012511..28012535 (25 bp)
CCATGATGGCGGTGAACGCCCGCGC
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--548--9631Chr07:28012748..28012772 (25 bp)
TCAGGACGCCGGTCCTGCAGGGCAA
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--657--9031Chr07:28012763..28012787 (25 bp)
TGCAGGGCAAGGTGTCGGTGATGTC
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--1121--7191Chr07:28012791..28012815 (25 bp)
GTCGTCTCCTACCATGAGCGACGAG
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--1093--9491Chr07:28012795..28012819 (25 bp)
TCTCCTACCATGAGCGACGAGCTGA
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--1060--3711Chr07:28012799..28012823 (25 bp)
CTACCATGAGCGACGAGCTGAAGCA
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--273--4751Chr07:28012815..28012839 (25 bp)
GCTGAAGCAGATGATCGACGTCGAC
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--144--5772Chr07:28012831..28012855 (25 bp)
GACGTCGACGCGAACGACATGATGA
LOC_Os07g46860
OsAffx.28936.1.S1_x_at--503--9371Chr07:28012835..28012859 (25 bp)
TCGACGCGAACGACATGATGATGGG
LOC_Os07g46860
Target Sequence
GACGTCATGCACAACAACGCCGCCATCCCGGGGAGGTTCCCGCAGGACGACATGGCGTCCGTCGACCTCGCCGACTTCGA
CGCCATGATGGCGGTGAACGCCCGCGCGTCGCTCGCCGGCATCAAGCACGCCGCGCGCGTCATGGCGCCCCGCCGCGCCG
GCGTCATCCTCTGCACGGCCAGCGCCGTCGGCGTCCTCCCGCTCCCGGCGGTCGCCACGCACTCCATCACCAAGGCCACC
ATCATCGCCATCGTGCGCGCAGCGGCGGAGCCCCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGCGCCGT
CAGGACGCCGGTCCTGCAGGGCAAGGTGTCGGTGATGTCGGCGTCGTCTCCTACCATGAGCGACGAGCTGAAGCAGATGA
TCGACGTCGACGCGAACGACATGATGATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28936.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis