Browse Element(s) Details


Os.54006.1.S1_at

Description gb:AK109486.1
DB_XREF= gi:32994695
TID=Os.54006.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H07, full insert sequence.
FL= gb:AK101242.1 gb:AK109486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2795011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27890NANA4+16282115..16288051retrotransposon protein, putative, unclassified
LOC_Os04g27900NANA4+16290989..16291471hypothetical protein
LOC_Os04g27910NANA4+16295775..16298995hypothetical protein
LOC_Os04g27930NANA4+16302434..16303087hypothetical protein
LOC_Os04g27950Os.54006.1.S1_at11/114+16307599..16310334expressed protein
LOC_Os04g27960OsAffx.3923.1.S1_at11/114+16318382..16322121B3 DNA binding domain containing protein
LOC_Os04g27969NANA4+16329668..16330075NA
LOC_Os04g27980Os.54178.1.S1_at6/114+16332670..16333988Glycosyl hydrolases family 18 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54006.1.S1_at--570--551Chr04:16309893..16309917 (25 bp)
ATCCGCCTCTCTGACATGTGCGATG
LOC_Os04g27950
Os.54006.1.S1_at--1055--2791Chr04:16309944..16309968 (25 bp)
AAGATGGAGCTCAATGCGCGCAAAT
LOC_Os04g27950
Os.54006.1.S1_at--983--5111Chr04:16309963..16309987 (25 bp)
GCAAATACCCCATCGGGCAGTGCAG
LOC_Os04g27950
Os.54006.1.S1_at--826--10011Chr04:16310115..16310139 (25 bp)
TAGCAATGGCTCCTCAGACAGTTTT
LOC_Os04g27950
Os.54006.1.S1_at--731--1411Chr04:16310130..16310154 (25 bp)
AGACAGTTTTAGCAGCCTGGCTCTG
LOC_Os04g27950
Os.54006.1.S1_at--682--3912Chr04:16310146..16310170 (25 bp)
CTGGCTCTGGTCTTTGGTCTTGTTC
LOC_Os04g27950
Os.54006.1.S1_at--521--7811Chr04:16310161..16310185 (25 bp)
GGTCTTGTTCATCACACCATAGGAT
LOC_Os04g27950
Os.54006.1.S1_at--723--8951Chr04:16310213..16310237 (25 bp)
TGAAATGAAACCGTCCTGTTCTCTC
LOC_Os04g27950
Os.54006.1.S1_at--659--9271Chr04:16310226..16310250 (25 bp)
TCCTGTTCTCTCTACTGAGTTTGAT
LOC_Os04g27950
Os.54006.1.S1_at--1085--4811Chr04:16310267..16310291 (25 bp)
GCTCAAATCCTTTGTATTGGGCTAC
LOC_Os04g27950
Os.54006.1.S1_at--915--31Chr04:16310282..16310306 (25 bp)
ATTGGGCTACAAACATGCTCTGATA
LOC_Os04g27950
Target Sequence 
ATCCGCCTCTCTGACATGTGCGATGTCGANCTTGGCAAGGCNGCGCNGCGTAAGATGGAGCTCAATGCGCGCAAATACCC
CATCGGGCAGTGCAGGGGNNTCCTCCAAGAAGCACACCCACTACTCCACCACCACCACCACCACCGACAACGGTGCTTCN
GGTGATGACAACAACNGCAATGCTGGTGCCGGTGCCGATGCCGATGCCGGCAAGGAACAGTGCTAGCAATGGCTCCTCAG
ACAGTTTTAGCAGCCTGGCTCTGGTCTTTGGTCTTGTTCATCACACCATAGGATGTGTGTTGAANCAGTATTCTAGTAGA
GTGAAATGAAACCGTCCTGTTCTCTCTACTGAGTTTGATTTCTTGAAGAAACTTAGCTCAAATCCTTTGTATTGGGCTAC
AAACATGCTCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis