Browse Element(s) Details


OsAffx.24293.1.S1_at

Description tigr:9630.m01640
TID=OsAffx.24293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g280102/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27969NANA4+16329668..16330075NA
LOC_Os04g27980Os.54178.1.S1_at6/114+16332670..16333988Glycosyl hydrolases family 18 protein
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24293.1.S1_at--95--8031Chr02:10083823..10083847 (25 bp)
GGAGGTGAGCCAACCAAACACGCCC
NONE
OsAffx.24293.1.S1_at--135--3251Chr02:10083813..10083837 (25 bp)
CAACCAAACACGCCCCTATATAAAG
NONE
OsAffx.24293.1.S1_at--323--3691Chr02:10083798..10083822 (25 bp)
CTATATAAAGCCCGCGACCAACACG
NONE
OsAffx.24293.1.S1_at--984--5111Chr02:10083764..10083788 (25 bp)
GCAAAACCAACACCGCGGAGTCGGA
NONE
OsAffx.24293.1.S1_at--25--7211Chr02:10083720..10083744 (25 bp)
GTCGTGCCTGCCGTCAGGAAGGGCG
NONE
OsAffx.24293.1.S1_at--20--9312Chr04:16348916..16348941 (25 bp)
TCCGCGCTCGCCGTAGATGGGACGC
LOC_Os04g28010
OsAffx.24293.1.S1_at--376--3373Chr04:16349042..16349066 (25 bp)
CACCTCCTCTGCTGGGAGGACAACG
LOC_Os04g28010
OsAffx.24293.1.S1_at--13--9491Chr02:10083386..10083410 (25 bp)
TCTGCTGGGAGGACAACGCCGTCGT
NONE
OsAffx.24293.1.S1_at--1008--391Chr02:10083351..10083375 (25 bp)
ATCAGCCCGTCACGCGCGCGAAGAA
NONE
OsAffx.24293.1.S1_at--244--4571Chr02:10083336..10083360 (25 bp)
GCGCGAAGAAGAGCGCGTCACCATC
NONE
OsAffx.24293.1.S1_at--90--7651Chr02:10083305..10083329 (25 bp)
GGGAGCGCGAGGATCGCTCACTGAC
NONE
Target Sequence 
GGAGGTGAGCCAACCAAACACGCCCCTATATAAAGCCCGCGACCAACACGCACCGCACCGCAAAACCAACACCGCGGAGT
CGGAAGGGCGGCGGCGGGCTCCTGTCGTGCCTGCCGTCAGGAAGGGCGGCGGCGGGTCGACGCGCTCACCGGCCGCATCG
CGCAGGAGAGCCTCCGTGGCGAGCGCCGCCGGCTCTCCTCGCCCACTCCCTCGGGCTGGGGCTCCTCGCCTCCGCCTCCA
CGTCGGGCCTCCTCGCCCGTGGCCCGGCCCTCCTCTGGACCTGCAACTTCCAGACGCAGCTCACCTCCGCGCTCGCCGTA
GATGGGACGCCGCCTCCGCGCTCTCCACGCTGTCCACCGGCGCCTCCGCCGCCGCGGAGCTTGAGAGCCCCCAGCTCGAG
CTCTTCTTCGCCGCCACCGACCTCCACGTCCACCTCCTCTGCTGGGAGGACAACGCCGTCGTTGAGGCCGCCATCAGCCC
GTCACGCGCGCGAAGAAGAGCGCGTCACCATCGCGACGGGGAGCGCGAGGATCGCTCACTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis