Browse Element(s) Details


Os.54222.1.S1_at

Description gb:AK102622.1
DB_XREF= gi:32987831
TID=Os.54222.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full insert sequence.
FL= gb:AK102622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2804011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein
LOC_Os04g28090Os.10202.1.S1_at11/114+16392525..16399790Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54222.1.S1_at--490--1271Chr04:16371100..16371120 (21 bp)
AGATCAGGTCGCGTGGTAGTTCCCA
LOC_Os04g28040
Os.54222.1.S1_at--209--6951Chr04:16371111..16371135 (25 bp)
GTAGTTCCCACATTGGATCCTGGAT
LOC_Os04g28040
Os.54222.1.S1_at--102--5311Chr04:16371555..16371579 (25 bp)
GAAGGGTCCGTTGAGCAACTTCCAT
LOC_Os04g28040
Os.54222.1.S1_at--1015--291Chr04:16371578..16371602 (25 bp)
ATAGCCTGCGCATCGATTATATCCT
LOC_Os04g28040
Os.54222.1.S1_at--8--7591Chr04:16371615..16371639 (25 bp)
GGGCTCCATTCTGCATTTTTGATGA
LOC_Os04g28040
Os.54222.1.S1_at--1147--711Chr04:16371636..16371660 (25 bp)
ATGATCTATCTGGAATCCGCTCGGT
LOC_Os04g28040
Os.54222.1.S1_at--958--311Chr04:16371688..16371712 (25 bp)
ATACGCCTGGCAGTTTAGCTTGCAG
LOC_Os04g28040
Os.54222.1.S1_at--832--7831Chr04:16371726..16371750 (25 bp)
GGTAGCTGATTGTAGGCCTTGGTAT
LOC_Os04g28040
Os.54222.1.S1_at--7--8591Chr04:16371788..16371812 (25 bp)
TGGTTTCATGTCAGCACTTGCAGCA
LOC_Os04g28040
Os.54222.1.S1_at--622--10011Chr04:16371851..16371875 (25 bp)
TAGCTAGTTTGTTCTGCATCACCAG
LOC_Os04g28040
Os.54222.1.S1_at--879--3451Chr04:16371873..16371897 (25 bp)
CAGTCGCAGGTGTCTGATACAGCTA
LOC_Os04g28040
Target Sequence 
AGATCAGGTCGCGTGGTAGTTCCCACATTGGATCCTGGATGCCAAAGGATCGTCTATGACAGAGACGGTTTGGTTTCAGG
TGTGGCTGGCTTAGAGTTTGAATCACCACCTCTCAAAGGGAACGAGTCAAGGACTCCTGAGAGCAAGAGAAGGGTCCGTT
GAGCAACTTCCATAGCCTGCGCATCGATTATATCCTCTTTGAAAATGTGGGCTCCATTCTGCATTTTTGATGATCTATCT
GGAATCCGCTCGGTATAGGATGAGGATGGTGGATTTTGTATATACGCCTGGCAGTTTAGCTTGCAGATAATTGTTGTTTG
GTAGCTGATTGTAGGCCTTGGTATGGACCAATGTTGCTAGTTTCGAAATGACCAATGTTGCTGGTTTCATGTCAGCACTT
GCAGCACCTCTTCACCTCTATGGTGGCCATCAACATTAACTAGCTAGCTAGTTTGTTCTGCATCACCAGTCGCAGGTGTC
TGATACAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis