Browse Element(s) Details


OsAffx.7849.1.S1_at

Description tigr:9640.m04017
TID=OsAffx.7849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4106011/11AP2 domain containing protein, expressed
LOC_Os04g280743/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41040OsAffx.20066.1.S1_at11/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.47463.1.S1_x_at3/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.14491.2.S1_x_at2/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41050NANA12+25374216..25376181hypothetical protein
LOC_Os12g41060OsAffx.7849.1.S1_at11/1112+25381958..25385125AP2 domain containing protein, expressed
LOC_Os12g41070OsAffx.7850.1.S1_at11/1112+25387250..25387621hypothetical protein
LOC_Os12g41080NANA12+25400530..25404876retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0008219biological_processcell death
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009723biological_processresponse to ethylene stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7849.1.S1_at--836--7731Chr12:25382531..25382555 (25 bp)
GGTGGTGCCTCAGACCGGCACTAAA
LOC_Os12g41060
OsAffx.7849.1.S1_at--846--9831Chr12:25382510..25382534 (25 bp)
TAAAGCCAGCAAGCGCGGCGACAGC
LOC_Os12g41060
OsAffx.7849.1.S1_at--385--1491Chr12:25382446..25382470 (25 bp)
AGCAAGCACGGGTTCCTGGGCGTCC
LOC_Os12g41060
OsAffx.7849.1.S1_at--949--8651Chr12:25382430..25382454 (25 bp)
TGGGCGTCCACCAGCGCACGTATGG
LOC_Os12g41060
OsAffx.7849.1.S1_at--896--1711Chr12:25382421..25382445 (25 bp)
ACCAGCGCACGTATGGGCGATGGTC
LOC_Os12g41060
OsAffx.7849.1.S1_at--552--752Chr04:16388214..16388237 (24 bp)
ATGGTCGGCCGAGATCCGGGACAAT
LOC_Os04g28074
OsAffx.7849.1.S1_at--311--4512Chr04:16388220..16388359 (25 bp)
GCCGAGATCCGGGACAATGTCATCA
LOC_Os04g28074
OsAffx.7849.1.S1_at--1072--651Chr12:25382183..25382207 (25 bp)
ATGCAACACCAGTGGCGATCTTGGC
LOC_Os12g41060
OsAffx.7849.1.S1_at--105--7531Chr12:25382104..25382128 (25 bp)
GTGGAGCTGACAAGCCTACTGTGCA
LOC_Os12g41060
OsAffx.7849.1.S1_at--606--7712Chr04:16388724..16388748 (25 bp)
GGTGGGAGTTCATCCAGGAGCTCCT
LOC_Os04g28074
OsAffx.7849.1.S1_at--173--4151Chr12:25381998..25382022 (25 bp)
CGCTGGACTACCTCAACGGCCAGGA
LOC_Os12g41060
Target Sequence 
GGTGGTGCCTCAGACCGGCACTAAAGCCAGCAAGCGCGGCGACAGCGGGGCAAAGGCGAAGCCGGCGGCGGCGAAGAAGA
GGAGGAGCAAGCACGGGTTCCTGGGCGTCCACCAGCGCACGTATGGGCGATGGTCGGCCGAGATCCGGGACAATGTCATC
AAGGGCTCCCGCTTCTGGATCGGCACCTTCGACACCGCGCTCGACGCCGCCCTCGCCTACGACGCCGTCTCCCGCAGGCT
CTACGGCCTCAACGCCAAGACCAACTTCCCCGCTGCCGCCGGCGAAGACGACCTCCCTCCGCCGCCGCCGCCGGCGAAGC
CCTGCAGCTCCACCAAGCGGCCAAAGAAATGCAACACCAGTGGCGATCTTGGCGCCGCCGCGGCGCCGCCGCAAGCCGTG
GATACTCCGGCGGCGGCAGCAGCTGGCGTGGAGCTGACAAGCCTACTGTGCAGCGTGGCGGCGCAGGCGCAGGAGGTGAG
CGACGGGTGGGAGTTCATCCAGGAGCTCCTCCTCCTCGGCGGCGGCGTTTCGCCGCTGGACTACCTCAACGGCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis