Browse Element(s) Details


Os.17580.1.S1_at

Description gb:AK061609.1
DB_XREF= gi:32971627
TID=Os.17580.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E09, full insert sequence.
FL= gb:AK061609.1 gb:AK103735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2805010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein
LOC_Os04g28090Os.10202.1.S1_at11/114+16392525..16399790Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g28100OsAffx.3925.1.S1_at11/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28100OsAffx.23801.2.S1_s_at1/114+16403115..16406446U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17580.1.S1_at--9--671NONE
ATGACATGGACGGTTCTATCCTTGC
NONE
Os.17580.1.S1_at--1128--9531Chr04:16378472..16378496 (25 bp)
TCTATCCTTGCCATAACCAACTTAG
LOC_Os04g28050
Os.17580.1.S1_at--368--7411Chr04:16378678..16378702 (25 bp)
GTGTTCGTCCCCAGGACACAGAAGA
LOC_Os04g28050
Os.17580.1.S1_at--792--5591Chr04:16378739..16378763 (25 bp)
GAAATTCTGACACTGTCCACTGGCA
LOC_Os04g28050
Os.17580.1.S1_at--483--6291Chr04:16378765..16378789 (25 bp)
GATGATATGGTGTCCAACCCGTTGT
LOC_Os04g28050
Os.17580.1.S1_at--748--3251Chr04:16378779..16378803 (25 bp)
CAACCCGTTGTGCATCTGTGTGAAA
LOC_Os04g28050
Os.17580.1.S1_at--401--8291Chr04:16378888..16378912 (25 bp)
GGCTTCGAAATGGATGCTTGCTAAA
LOC_Os04g28050
Os.17580.1.S1_at--971--7731Chr04:16378945..16378969 (25 bp)
GGTGTTGACACCCTGTGAACTTTGT
LOC_Os04g28050
Os.17580.1.S1_at--366--2031Chr04:16378963..16378987 (25 bp)
ACTTTGTAAGGTCACTTCCAGTTGA
LOC_Os04g28050
Os.17580.1.S1_at--432--5971Chr04:16378986..16379010 (25 bp)
GAGAAACTATCCTTCGTGTACCCAT
LOC_Os04g28050
Os.17580.1.S1_at--193--10611Chr04:16378998..16379022 (25 bp)
TTCGTGTACCCATATTTCGTGCAAT
LOC_Os04g28050
Target Sequence 
ATGACATGGACGGTTCTATCCTTGCCATAACCAACTTAGAGTCACCCCGGCTTCAAGGGCCTTATTCGGAGCCGCCTCCT
AAGAGGAGGAAAACGCCTCGGTGTTCGTCCCCAGGACACAGAAGATTGCTGCCATTCTAATGGTGAACATATGGTGAAAA
AGAAATTCTGACACTGTCCACTGGCATGATGATATGGTGTCCAACCCGTTGTGCATCTGTGTGAAAGCTTTTTGTCCTTT
TAACCAGCTAAGTAGAGCTAGCTTCTGTAAAATGTATCGTGGGTACACCATGATGTATGTTTCTTTGCTAGGCTTCGAAA
TGGATGCTTGCTAAAATATGGGCGTAGGTATTTTGCATACAATAGATGGTGTTGACACCCTGTGAACTTTGTAAGGTCAC
TTCCAGTTGAGAAACTATCCTTCGTGTACCCATATTTCGTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis